Transcript Information: R_Transcript_135610.p1


Annotated TAIR IDAT5G63920.1
Annotated Gene Nametopoisomerase 3alpha
Annotated Gene Symbol(s)TOP3A, AtTOP3alpha
Annotation TypeOrtholog
Chromosome Positionchr5:25574533-25581230 | Forward length=926
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 18.1144351174938
Replicate 26.3196785411432
Replicate 37.7792188074062
Condition 2: 8 Hour
Replicate 17.2002989003285
Replicate 27.6381230051574
Replicate 38.8601426097532
Condition 3: 24 Hour
Replicate 111.092485076356
Replicate 28.4290395363989
Replicate 312.005731085684


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_135610.p1 GENE.R_Transcript_135610~~R_Transcript_135610.p1 ORF type:internal len:1010 (+),score=163.52,Topoisom_bac|PF01131.16|1.3e-106,Toprim|PF01751.18|1.5e-16,zf-C4_Topoisom|PF01396.15|8.9e-09,zf-C4_Topoisom|PF01396.15|0.68,zf-GRF|PF06839.8|1.6e+04,zf-GRF|PF06839.8|1e-09,zf-GRF|PF06839.8|7.9e+03 R_Transcript_135610:2-3028(+)
AGAAACCAAACAAAAGCCAAAACCCTCTCTCACTTCCCGGAAACCCTAATTTCCGATTTTCCTATGGCCGGGAACCGCCCAATCAGGGCACTGAATGTGGCGGAAAAGCCGTCGGTGGCGAAAGCAGTTTCTGGAATTCTTTCAAGAAACCAGGCGAGGATGAGAGAAGGAAGATCGAGGTTCAACAAAATCTACGAATTCGAATACACAATTCGAGGTCAGCCTTGCCACATGCTTTTCACTTCAGTTACTGGACACTTGATGGAGCTCGAATTCGATGAACGGTACCGGAAATGGTATTCTTGTGATCCTGCTGATCTTTATCAGGTTCCTGTTCGTAAATTTGTCCCCGAGGACAAGTTGGATATCAAGAGGACATTGCAGCAGGAAGTTAGGAGCTGCCAGTGGCTTATATTGTGGCTTGATTGTGACAGGGAGGGAGAGAACATTGCGTTTGAGGTGATTGAAGTTTGCAAAGAAGTGAATCGCAATTTGAATATATTGAGGGCTCGCTTCTCTGCATTGATCGACAGGGATATCCATGAGGCTGTGCAGAATCTCGATCGTCCAAACCCTTTATTTGCTGATGCTGTAGATGTTCGGCAGGAGATAGATCTACGTATTGGTGCTTCATTCACTAGATTTCAGACAATGCTCCTCAGGGATGCATTCAACATCAACGTTGCTACTGATGAGAGAAATCTGATTTTAAGTTATGGTCCCTGTCAGTTCCCAACACTTGGTTTTGTGGTGGAAAGGTATTGGGAAATACAAGCGCATGAGCCAGAGGATTTTTGGACCATCAACTGTACACATAATTCAGAAGAAGGGATTGCTACTTTCAATTGGATGCGGGGCCATTTGTTTGACTATACTTGTGCAGTTACAATATATGAGATGTGTGTTGAAGAGCCAACTGCTACTGTTACAAAGGTGAGGCAACAGGAAAAACTGAAGTATCCTCCTTATCCATTGAGTACTATAGAGCTTGAAAAACGTGCGTCACGGTACTTCAGGATGAGTTCAGAACAAACAATGAAGGTTGCAGAAGAGCTGTATCAATCTGGTTTCATTAGTTATCCTCGAACAGAAACTGACAGTTTTTCGGCTAGGACTGACTTGCGTGCCATTGTGCTCGAACAACAAGGACATCCTGTATGGGGCCGTTATGCAGAGCGACTGTTAGATCCTGAAGCTGCTCTCTGGAGGAATCCAAGTAGTGGGGGCCATGATGACAAAGCTCATCCTCCCATTCACCCAACTAAATTTTCTGCTGGAGAGTCTGGATGGAGGCAAGATCACCATAAAGTTTATGAGCTTGTTGTTCGCCATTTTCTGGCATGTGTGTCCCAGCCAGCTGTAGGGGCTGAAACTACTGTAGAAATCGATATCGCTGGTGAACTATTTTCTGCATCTGGAAGAGTGATACTTTCTAAAAATTACTTGGATGTCTATCGATTTGAAACTTGGGGAGGATCTATGATCCCAACTTATGTGCTTGGACAGCAGTTTACACCAGCTACATTGACTTTGGACTCAGGAACTACGAGGCCACCGCCACTCTTAAGTGAAGCTGATTTACTGAGTTGCATGGACAAGGCGGGAATCGGAACCGATGCAACTATGCATGATCACATCAAGAAGCTTTTGGATCGTTTTTATGCTACTAAAGACGCAAATACTCGTTTTTCACCTACCAATCTTGGCGAGGCACTAGTTATGGGATATGATGATATGGGATATGAGCTCTGGAAACCTTATTTGAGATCCAAGATGGAGGATGATATGAAGGCTGTTAGCTTTGGTACAAAGAGGAAAACTGAAGTTCTGGCTTCTGGTTTGCAGGAGATGAAGACTTGTTTCTTGGATGCTAAGCAGAGCAAAGCTAAACTCTTTGAAGCAATGGAGATTTTCTTTGATAGAACTAATAGAACTGGTATGGAGGAGCAGAATGCTGTATTTGGTGTTGTTCGGCGCTGTGGTCTTTGTCAGCAAGCTGATATGGTGCTGAAACGTAAACCGGATGGAAACTTCATGGTTGGATGCTCGGGTTTTCCTCAGTGTAGAAATGTTGTTTGGCTTCCTGGATCTATATCAGAGGCAGTTGTAACCTCAAATATATGCAACTCTTGCGCGCCAGGTCCAGTTTTCTTGATTCAGTTCAAATTCCGTCGGTCAGAAATACCTCCAAATTACAATGTGGACCACTTAGGCTGCATTGGTGGATGTGATGGAACACTCAGACAGCTTACAGAGATATGTGGAACTGGTTCTCGTAATCCTTCTGGGATGCCAGGTCCAGGGAGAGGTCGGCAACCTACTGCATCTTCTGGACACATTCCTGCTAGTTATGCACGAAACGAAATCTGTGCCCACTGCAGAGGAACAGGACATAACTCGAATGATTGCCCTTCACAGGTTTCAAATTCTGGACGTGCTAGGTCTCAAAGAACAAATAATCAGAATGGCCAATCATCAGTGACTTGTAGTTCATGTGGAGAACCCTGCATATTGCGGACAGCAAATACAGCTAACAATAGGGGAAGAAAGTTTTACTCATGTCAATCTCAGGAGTGCAGATTCTTTGTGTGGGAGGATATGATTGGCGATGGAGGTGGAGTATCGAATTCTTCACATTCCAATGGTAGAGGCTCAACTGCTAATTCAAGTAGGCGAGGTGGCAGGGGCAGGGGTCGCCGTGGTGGGGGACGGGGAAATGATGTGACCTTTGTTTCAGCAACTGGTGATCCTGTATCCGGCAGAAGATGCTTTACTTGTGGAGATCCATCTCACTTTGCCAGCGCCTGCCCTAAGTACGTAGATCCTCTGTCCATTTTATTAGCGACTGTCCTCAAACCAACTTCTGAGCAATGCAGTTTTAAATCATTTATTCTGTACATCTTAATTGTATGTATCAATTGTAACCCTTATTCGAGCATGTTTGGCCTAATTTCTCCTAAAAACTATTTCTCCCTCTTACATTCCTTATCTCCTCCCTCCTCATCCTTCACATTCTCTATCATTTTT

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_135610.p1 GENE.R_Transcript_135610~~R_Transcript_135610.p1 ORF type:internal len:1010 (+),score=163.52,Topoisom_bac|PF01131.16|1.3e-106,Toprim|PF01751.18|1.5e-16,zf-C4_Topoisom|PF01396.15|8.9e-09,zf-C4_Topoisom|PF01396.15|0.68,zf-GRF|PF06839.8|1.6e+04,zf-GRF|PF06839.8|1e-09,zf-GRF|PF06839.8|7.9e+03 R_Transcript_135610:2-3028(+)
RNQTKAKTLSHFPETLISDFPMAGNRPIRALNVAEKPSVAKAVSGILSRNQARMREGRSRFNKIYEFEYTIRGQPCHMLFTSVTGHLMELEFDERYRKWYSCDPADLYQVPVRKFVPEDKLDIKRTLQQEVRSCQWLILWLDCDREGENIAFEVIEVCKEVNRNLNILRARFSALIDRDIHEAVQNLDRPNPLFADAVDVRQEIDLRIGASFTRFQTMLLRDAFNINVATDERNLILSYGPCQFPTLGFVVERYWEIQAHEPEDFWTINCTHNSEEGIATFNWMRGHLFDYTCAVTIYEMCVEEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEQTMKVAEELYQSGFISYPRTETDSFSARTDLRAIVLEQQGHPVWGRYAERLLDPEAALWRNPSSGGHDDKAHPPIHPTKFSAGESGWRQDHHKVYELVVRHFLACVSQPAVGAETTVEIDIAGELFSASGRVILSKNYLDVYRFETWGGSMIPTYVLGQQFTPATLTLDSGTTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYATKDANTRFSPTNLGEALVMGYDDMGYELWKPYLRSKMEDDMKAVSFGTKRKTEVLASGLQEMKTCFLDAKQSKAKLFEAMEIFFDRTNRTGMEEQNAVFGVVRRCGLCQQADMVLKRKPDGNFMVGCSGFPQCRNVVWLPGSISEAVVTSNICNSCAPGPVFLIQFKFRRSEIPPNYNVDHLGCIGGCDGTLRQLTEICGTGSRNPSGMPGPGRGRQPTASSGHIPASYARNEICAHCRGTGHNSNDCPSQVSNSGRARSQRTNNQNGQSSVTCSSCGEPCILRTANTANNRGRKFYSCQSQECRFFVWEDMIGDGGGVSNSSHSNGRGSTANSSRRGGRGRGRRGGGRGNDVTFVSATGDPVSGRRCFTCGDPSHFASACPKYVDPLSILLATVLKPTSEQCSFKSFILYILIVCINCNPYSSMFGLISPKNYFSLLHSLSPPSSSFTFSIIF

Click here to download the sequence:
Link to NCBI Protein BLAST