Transcript Information: R_Transcript_136028.p1


Annotated TAIR IDAT5G06860.1
Annotated Gene Namepolygalacturonase inhibiting protein 1
Annotated Gene Symbol(s)PGIP1, ATPGIP1
Annotation TypeHomolog
Chromosome Positionchr5:2132373-2133434 | Forward length=330
E-Value3E-34
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 16.9934716301604
Replicate 25.5507460870673
Replicate 36.1435694702324
Condition 2: 8 Hour
Replicate 169.704971861315
Replicate 246.349567341308
Replicate 367.668648021596
Condition 3: 24 Hour
Replicate 17.3887195675369
Replicate 23.5491221203228
Replicate 37.5474843747922


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_136028.p1 GENE.R_Transcript_136028~~R_Transcript_136028.p1 ORF type:5prime_partial len:261 (+),score=29.89,LRR_8|PF13855.2|3e+03,LRR_8|PF13855.2|4.5e-09,LRR_8|PF13855.2|9.7e+02,LRR_1|PF00560.29|9.5,LRR_1|PF00560.29|1.2,LRR_1|PF00560.29|2.5e+02,LRR_1|PF00560.29|3.8,LRR_4|PF12799.3|7.3e+03,LRR_4|PF12799.3|6.6e-05,LRR_4|PF12799.3|0.0065,LRR_4|PF12799.3|5.9,LRRNT_2|PF08263.8|4.1e-07 R_Transcript_136028:3-785(+)
GGGAAACAATTTATATTCATATCCAAAGTTCATTCATTATTTTTTCAAAGGAACAAAATGAGGTGCTTCAAAAATCTCTTTACTTGTGTCCTCCTTTTTTCTCTGATTGCCATCTCTCGGGCCACCGATGATCCGTCCTGTGACCCGAATGACCAAGCAGTTCTTCTACAAATCAAAGCCAAAATTAAAAGCCCGGGCTCTGGGATAGGTTCACTGGACGACTGGCAGCCGAACACAAACTGCTGTGACTGGGACTTCATCGGCTGCATTGCCGTCGGAAACAAGAACCCAGGCCGTGTGAAAGCGCTCACCATCTCCGGCGGGAGCGGCCTTGTGGGCCAAATCCCCGACGAGATCGGAAACCTACCATTCCTAGAGAACATCATGTTCTTCGATGAGCCGAAACTCACAGGCCCAATCCCACAGTCCATGAGCAAGCTCAAGAACCTTCAAGTCATAACTCTGAATTCCAACAGTCTTTCTGGAGCTATCCCTGCATTTCTTGGCCAGCTCAAGAACCTCCAACAAGTTGACATTTCTGACAACAAGTTTTCTGGTGTAATTCCAGCGTCTCTTTCTAAGCTCACCAAACTCTCGGCCTTCAATGTGTCCCATAATATGTTAACGGGAGCCATCCCTAACTTGCAGACCAAGAAACTTACGAGCTTTGATGTGAGTTTCAACCAGCTTTGTGGGGCCATTCCTGCTGGTTTGAACAAGTTTGGGTCAAGTAGCTTTCAGAATAACAAGTGTCTTTGTGGTTCTCCCTTGGCCGCTTGCTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_136028.p1 GENE.R_Transcript_136028~~R_Transcript_136028.p1 ORF type:5prime_partial len:261 (+),score=29.89,LRR_8|PF13855.2|3e+03,LRR_8|PF13855.2|4.5e-09,LRR_8|PF13855.2|9.7e+02,LRR_1|PF00560.29|9.5,LRR_1|PF00560.29|1.2,LRR_1|PF00560.29|2.5e+02,LRR_1|PF00560.29|3.8,LRR_4|PF12799.3|7.3e+03,LRR_4|PF12799.3|6.6e-05,LRR_4|PF12799.3|0.0065,LRR_4|PF12799.3|5.9,LRRNT_2|PF08263.8|4.1e-07 R_Transcript_136028:3-785(+)
GKQFIFISKVHSLFFQRNKMRCFKNLFTCVLLFSLIAISRATDDPSCDPNDQAVLLQIKAKIKSPGSGIGSLDDWQPNTNCCDWDFIGCIAVGNKNPGRVKALTISGGSGLVGQIPDEIGNLPFLENIMFFDEPKLTGPIPQSMSKLKNLQVITLNSNSLSGAIPAFLGQLKNLQQVDISDNKFSGVIPASLSKLTKLSAFNVSHNMLTGAIPNLQTKKLTSFDVSFNQLCGAIPAGLNKFGSSSFQNNKCLCGSPLAAC*

Click here to download the sequence:
Link to NCBI Protein BLAST