Transcript Information: R_Transcript_136191.p1


Annotated TAIR IDAT5G35695.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41980.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:13869120-13869941 | Forward length=211
E-Value0.0005
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.18072238569029
Replicate 21.2473049752256
Replicate 30.22679938214012
Condition 2: 8 Hour
Replicate 10.24243430640837
Replicate 20.22139486971471
Replicate 31.0783135022012
Condition 3: 24 Hour
Replicate 10.90922008822591
Replicate 21.5285822993469
Replicate 30.65012984218507


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_136191.p1 GENE.R_Transcript_136191~~R_Transcript_136191.p1 ORF type:3prime_partial len:101 (-),score=23.63 R_Transcript_136191:3-302(-)
ATGCAATTTATCTATGTGCTGCCTGGATGGGAGGATTCAGCACATGATAATAGAGTTCTTCGTGATGCACTTTCTAGAAAAAAATCCCTTAAAAGTCCCTCAAGTGTTCTAGGGATGAGTCAATCTACAGCTCAAGTCAGGGCTAGACAAGGTGCTGGTTCTAGCAACTCTGGTAGAAATTGTGTGAGATGGTCATTTGCTGAGGATCGTGCCCTTATTAGTGCAATGAATGATCTTTTTGATATTGGTGGTTGGAAGACAGACAATGGCCAATTAAAAAATGGTGCTTATTATGTGCAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_136191.p1 GENE.R_Transcript_136191~~R_Transcript_136191.p1 ORF type:3prime_partial len:101 (-),score=23.63 R_Transcript_136191:3-302(-)
MQFIYVLPGWEDSAHDNRVLRDALSRKKSLKSPSSVLGMSQSTAQVRARQGAGSSNSGRNCVRWSFAEDRALISAMNDLFDIGGWKTDNGQLKNGAYYVQ

Click here to download the sequence:
Link to NCBI Protein BLAST