Transcript Information: R_Transcript_136388.p1


Annotated TAIR IDAT4G13650.1
Annotated Gene NamePentatricopeptide repeat (PPR) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr4:7939611-7942898 | Reverse length=1064
E-Value5E-105
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.535295781238
Replicate 20.44151099006234
Replicate 30.7225256017478
Condition 2: 8 Hour
Replicate 10.71512456037515
Replicate 20.54857303582348
Replicate 31.0602576296955
Condition 3: 24 Hour
Replicate 11.5555523588865
Replicate 20.95332310625159
Replicate 32.0200101288141


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_136388.p1 GENE.R_Transcript_136388~~R_Transcript_136388.p1 ORF type:5prime_partial len:856 (+),score=149.28,PPR_2|PF13041.2|1.1e-08,PPR_2|PF13041.2|0.00065,PPR_2|PF13041.2|0.003,PPR_2|PF13041.2|2.9e-05,PPR_2|PF13041.2|7.1,PPR_2|PF13041.2|0.059,PPR_2|PF13041.2|0.49,PPR_2|PF13041.2|1.1e-07,PPR_2|PF13041.2|1.2e+02,PPR_2|PF13041.2|1.6e+02,PPR_2|PF13041.2|5.1e+03,PPR_2|PF13041.2|4.6e-10,PPR_2|PF13041.2|11,PPR_2|PF13041.2|55,PPR|PF01535.16|8.1e+02,PPR|PF01535.16|0.0093,PPR|PF01535.16|0.00011,PPR|PF01535.16|0.0027,PPR|PF01535.16|7.8e-05,PPR|PF01535.16|0.062,PPR|PF01535.16|6e+02,PPR|PF01535.16|0.0077,PPR|PF01535.16|2.3e-06,PPR|PF01535.16|0.46,PPR|PF01535.16|1e+04,PPR|PF01535.16|2.9e+02,PPR|PF01535.16|1.2e-07,PPR|PF01535.16|12,PPR|PF01535.16|0.24,PPR|PF01535.16|7.4e+03,PPR|PF01535.16|0.55,PPR_3|PF13812.2|0.13,PPR_3|PF13812.2|0.044,PPR_3|PF13812.2|0.19,PPR_3|PF13812.2|1.1e+03,PPR_3|PF13812.2|3.8,PPR_3|PF13812.2|5.8e+03,PPR_3|PF13812.2|0.13,PPR_3|PF13812.2|0.027,PPR_3|PF13812.2|87,PPR_3|PF13812.2|1.2e+04,PPR_3|PF13812.2|1.6e+04,PPR_3|PF13812.2|3.9e+02,PPR_3|PF13812.2|6.9e+03,PPR_3|PF13812.2|16,PPR_3|PF13812.2|1.6e+04,PPR_3|PF13812.2|1.3,PPR_1|PF12854.3|24,PPR_1|PF12854.3|7.8e+02,PPR_1|PF12854.3|0.04,PPR_1|PF12854.3|0.011,PPR_1|PF12854.3|3.5,PPR_1|PF12854.3|2.7e+02,PPR_1|PF12854.3|7e+02,PPR_1|PF12854.3|0.61,PPR_1|PF12854.3|0.33,PPR_1|PF12854.3|6,PPR_1|PF12854.3|1.6e+02,PPR_1|PF12854.3|1.3,PPR_1|PF12854.3|0.3,PPR_1|PF12854.3|0.33,PPR_1|PF12854.3|2.7e+03 R_Transcript_136388:2-2569(+)
TGGCACCTTCACCTGGCCTTTAGGCCAGAGGTTTTACTTGGCAACTTTCATGGCCTGATGCCTCTCCTTTGTCCTCCCGATCCTATCTCTTCCCCCAACTTCGACCCATTCACTCTTCTCCACAACTGCACCAACCCAACTCATCTCACTCAAATCCATGCCAAAATCATCCGATCAAATCTCTCCCACAATCCCCTCATTGCCACCAAATTACTCAGACTTTATTCCTCCTATTCTAAACTAGACTATGCCACTTCTCTTTTCCACCAAATCGAAAACCCAACAACCTTCACTTGGAATCTCATGATCAGGGCTCACACTCTCAACGGCTCTTCCCACCAAGCTCTCCTTCTCTACAATCTCATGCTCTGTACCGGCATCCCACCTGACAAATTCACCTTTCCCTTTGTTATCAAGGCTTGTTCTGGTGCTTACTTAGTTGATAAGGGTAAGGAAGTTCATGCCCACGCCATAAAAACCGGTCACTATGGTAAAGATATCTATGTTAAGAATACCCTTTTGGATATGTACCTTAAATGTGGGGATTTGGAATGTGCCCACCAGGTGTTCGAGGAAATGCGTGTGAGAAATGTTGTGTCTTGGACCACTATGCTTTCTGGGTTAGTTGGATGTGGGGAGTTGGATGCTGCTAGGGTTGCTTTCGATCGAATGCCTGTGAGAAATGTGGTTTCTTGGACTGCTATGATTAATGGGTATGTTTGGATTGGTGAGTTTGAGAAGGGTATCGGGGTTTTTGTTGGAATGAGAGGGTTGGGGTTGGAATTGAATGAGTTCAGTTTGACTGCAGTAAGTGGGGCTTTGAGAGAGGTTAGAGAAGGTCAGCAAATTCATGGGTTTGGTCTTAAGATTGGATTATTATGTGGGGGTTCTATTCATTTGTGTAATGTTCTGATGAATATGTACTCTAAGTGTGGGTCTGAGTTTGATGCCCGGAAGGTGTTCGATGAAATTCCTAAACCAGATGTTGTTTCTTGGACTGCTCGGATTGGGGTGGCTTGTGATGGTACTGAAGCTTTAAAGGCTTTTAGATTTATGCACTCGAATGGTTTGGAAGTGAATGAACTTACTATAATAAATATATTGTCTGCGATTGAGGACCCTAAGCTGTTGTTACCTGGGAGACAAGTTCATTCACTTTGCCACAAGGAGGGTTATTTAACAGTTATGTCCGTCAGTAATGCTCTTATTACCATGTATGGGAAGTTTAGTGAGATGGATGATGCTAGGCTTGTGTTTGATGAAATGGCTTCTCATGATTTGATATCTTGGAATTCTTTGATTGGAGGGTACTCTGAACATGGGCTATTGAGTTTAGTGCTTAGTCTATTTTCTGAAATGTGCGGTCTTGGTATTCAGCCTGACCAGTACACCCTTGCCAGTGTTCTTGGCACAGCTTCAGGTCCCAGCTTTTGTGATATTGTGATGCAAATCCATACGCTATTGACTAAGACTGGTTTGGCATCAGATGATTCAATGCTATCTTGTTTGATTTCGTCGTATGGTAAATGTCATAACTTAGACTATGCAAAGAAGGTATTATCTGCAATAAAAGAGAAAAATGAAGGGCATCTGCAAGTCATGGCAGCCACTGCGATTGCTGCAGGATACCCTGCTGATGCTCTGGAATGTTGCAAATCTGCGGTGAGCTTGTGGTCTAAAATAGACGGTGTTACGTTGAGCATCATGCTCAAAGCTTGTAGTGGTTTAACCAATCTCGGACAGGGAAAAGCTATCCATAGTTTGGCTCTGAAATCTGGACTTGATAGTGATAAGTTTGTCGAGAGTGCTGTTGTCGATTTTTATTGCAAATGTGGAAGCATTATTGATGCACACAAGGAGTTTTTGCATATATCAAGCGATAATTTGGCTGCTTGGAATGCTATGATTATGGGATATGCTCAACATGGATGTTATGGTGAAGTCGTTGACCTGTTTGACAAGATGAACGAATTGGGTGTTAAGCCCGACGAGATAACATACCTTGGGATTCTCCAACTTTGTTGTCATGTTGGACTCGTGAAAGAAGCTAAGATTCATTTGAGTTCCATGTTCGAGCTTCATGGAGTGGTTCCATGTCTCGAACACTATGCTTCGATGGTCGACTTGCTAGGCCGAGTTGGGCTTGTGAAGGAAGCAAAGCTCCTCATTGATCAGATGCCTGTTAACCCTGATGCTCAAGTTTGGCAAAGTCTCCTGTCAGCCTGCCACAACATAGGTGATCTGGAAGTTGGAAAAGTTGCAGCTGACGAACTTCTTAGGTTACAGCCTCAAAATGACTCTGCCTACATTCTTCTGTCAAATATTTATGCTAGAACAGGCAATTGGGATGCTGTAAGAAGACTTAGAAAGGAAATGAAGGATAAATTGATATACAAGGAACCAGGGTCTAGTTGGACTGAAGTTGGAGGTTTGGTTTATCACTTCCTGGCGGAAGACACTTCTCATCCTGAGAAAGAAAATATATATTTTCATTTACAAAGTCTGGCTCAGCAAATGTTCCCCGTATCCGAAGAAGAAGAAGAAGATTCTTGTGTCGATGGTTTGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_136388.p1 GENE.R_Transcript_136388~~R_Transcript_136388.p1 ORF type:5prime_partial len:856 (+),score=149.28,PPR_2|PF13041.2|1.1e-08,PPR_2|PF13041.2|0.00065,PPR_2|PF13041.2|0.003,PPR_2|PF13041.2|2.9e-05,PPR_2|PF13041.2|7.1,PPR_2|PF13041.2|0.059,PPR_2|PF13041.2|0.49,PPR_2|PF13041.2|1.1e-07,PPR_2|PF13041.2|1.2e+02,PPR_2|PF13041.2|1.6e+02,PPR_2|PF13041.2|5.1e+03,PPR_2|PF13041.2|4.6e-10,PPR_2|PF13041.2|11,PPR_2|PF13041.2|55,PPR|PF01535.16|8.1e+02,PPR|PF01535.16|0.0093,PPR|PF01535.16|0.00011,PPR|PF01535.16|0.0027,PPR|PF01535.16|7.8e-05,PPR|PF01535.16|0.062,PPR|PF01535.16|6e+02,PPR|PF01535.16|0.0077,PPR|PF01535.16|2.3e-06,PPR|PF01535.16|0.46,PPR|PF01535.16|1e+04,PPR|PF01535.16|2.9e+02,PPR|PF01535.16|1.2e-07,PPR|PF01535.16|12,PPR|PF01535.16|0.24,PPR|PF01535.16|7.4e+03,PPR|PF01535.16|0.55,PPR_3|PF13812.2|0.13,PPR_3|PF13812.2|0.044,PPR_3|PF13812.2|0.19,PPR_3|PF13812.2|1.1e+03,PPR_3|PF13812.2|3.8,PPR_3|PF13812.2|5.8e+03,PPR_3|PF13812.2|0.13,PPR_3|PF13812.2|0.027,PPR_3|PF13812.2|87,PPR_3|PF13812.2|1.2e+04,PPR_3|PF13812.2|1.6e+04,PPR_3|PF13812.2|3.9e+02,PPR_3|PF13812.2|6.9e+03,PPR_3|PF13812.2|16,PPR_3|PF13812.2|1.6e+04,PPR_3|PF13812.2|1.3,PPR_1|PF12854.3|24,PPR_1|PF12854.3|7.8e+02,PPR_1|PF12854.3|0.04,PPR_1|PF12854.3|0.011,PPR_1|PF12854.3|3.5,PPR_1|PF12854.3|2.7e+02,PPR_1|PF12854.3|7e+02,PPR_1|PF12854.3|0.61,PPR_1|PF12854.3|0.33,PPR_1|PF12854.3|6,PPR_1|PF12854.3|1.6e+02,PPR_1|PF12854.3|1.3,PPR_1|PF12854.3|0.3,PPR_1|PF12854.3|0.33,PPR_1|PF12854.3|2.7e+03 R_Transcript_136388:2-2569(+)
WHLHLAFRPEVLLGNFHGLMPLLCPPDPISSPNFDPFTLLHNCTNPTHLTQIHAKIIRSNLSHNPLIATKLLRLYSSYSKLDYATSLFHQIENPTTFTWNLMIRAHTLNGSSHQALLLYNLMLCTGIPPDKFTFPFVIKACSGAYLVDKGKEVHAHAIKTGHYGKDIYVKNTLLDMYLKCGDLECAHQVFEEMRVRNVVSWTTMLSGLVGCGELDAARVAFDRMPVRNVVSWTAMINGYVWIGEFEKGIGVFVGMRGLGLELNEFSLTAVSGALREVREGQQIHGFGLKIGLLCGGSIHLCNVLMNMYSKCGSEFDARKVFDEIPKPDVVSWTARIGVACDGTEALKAFRFMHSNGLEVNELTIINILSAIEDPKLLLPGRQVHSLCHKEGYLTVMSVSNALITMYGKFSEMDDARLVFDEMASHDLISWNSLIGGYSEHGLLSLVLSLFSEMCGLGIQPDQYTLASVLGTASGPSFCDIVMQIHTLLTKTGLASDDSMLSCLISSYGKCHNLDYAKKVLSAIKEKNEGHLQVMAATAIAAGYPADALECCKSAVSLWSKIDGVTLSIMLKACSGLTNLGQGKAIHSLALKSGLDSDKFVESAVVDFYCKCGSIIDAHKEFLHISSDNLAAWNAMIMGYAQHGCYGEVVDLFDKMNELGVKPDEITYLGILQLCCHVGLVKEAKIHLSSMFELHGVVPCLEHYASMVDLLGRVGLVKEAKLLIDQMPVNPDAQVWQSLLSACHNIGDLEVGKVAADELLRLQPQNDSAYILLSNIYARTGNWDAVRRLRKEMKDKLIYKEPGSSWTEVGGLVYHFLAEDTSHPEKENIYFHLQSLAQQMFPVSEEEEEDSCVDGL*

Click here to download the sequence:
Link to NCBI Protein BLAST