Transcript Information: R_Transcript_13714.p1


Annotated TAIR IDAT5G25560.2
Annotated Gene NameCHY-type/CTCHY-type/RING-type Zinc finger protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:8899486-8901453 | Forward length=328
E-Value1.1E-156
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 132.794486515311
Replicate 221.906140101004
Replicate 329.167912539101
Condition 2: 8 Hour
Replicate 144.23779600469
Replicate 265.591920067478
Replicate 351.187541949491
Condition 3: 24 Hour
Replicate 130.9930397574
Replicate 217.129584405015
Replicate 323.565762046226


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_13714.p1 GENE.R_Transcript_13714~~R_Transcript_13714.p1 ORF type:complete len:300 (+),score=34.85,zinc_ribbon_6|PF14599.2|2e+03,zinc_ribbon_6|PF14599.2|1.1e+04,zinc_ribbon_6|PF14599.2|1.6e+04,zinc_ribbon_6|PF14599.2|7e+03,zinc_ribbon_6|PF14599.2|5.4e-27,zf-CHY|PF05495.8|4.8e-20,zf-CHY|PF05495.8|1.6e+04,zf-CHY|PF05495.8|6.1e+02,zf-RING_2|PF13639.2|1.6e+04,zf-RING_2|PF13639.2|8.2e+02,zf-RING_2|PF13639.2|1.5e+04,zf-RING_2|PF13639.2|4.7e-09,zf-RING_2|PF13639.2|49,zf-RING_5|PF14634.2|1.6e+04,zf-RING_5|PF14634.2|1.6e+04,zf-RING_5|PF14634.2|3.3e+03,zf-RING_5|PF14634.2|4.6e-08,zf-RING_5|PF14634.2|22,zf-RING_UBOX|PF13445.2|4.1e-07,zf-C3HC4|PF00097.21|1.6e+04,zf-C3HC4|PF00097.21|1.6e+04,zf-C3HC4|PF00097.21|1.6e+04,zf-C3HC4|PF00097.21|1.1e-07,zf-C3HC4|PF00097.21|1.7e+02,zf-C3HC4_2|PF13923.2|7.6e+03,zf-C3HC4_2|PF13923.2|5.7e+02,zf-C3HC4_2|PF13923.2|1.6e+04,zf-C3HC4_2|PF13923.2|2.4e-07,zf-C3HC4_2|PF13923.2|2.4 R_Transcript_13714:1683-2582(+)
ATGGAAACAACTATGAAGCAAAACAGCTTAGTGCAGTATCTTGAGCGAGATGAACTGCAACAAGGGGTCACAGATACAGTGTACCTAGAGCTCAAAGCCTCACAAAATACCTTGGATAGTCCCAAGGATCTGCTGGACAGGGGTTACATGGAATACGGATGTCAGCATTACCGGCGCAGATGTCAAATCAGAGCTCCTTGTTGTAATGAGATATTTGACTGCCGTCATTGCCACAATGAAGAGATGAATAGTATCAAGGTTGACCAGACAAAGAGACATGAGATTCCAAGACACAGAGTTGAGCAGGTGATTTGTTCACTTTGTGGGACTGAGCAAGAGGTTCGGCAAGTGTGTATCAACTGTGGCGTTTGCATGGGCAAGTATTTCTGTGAGAGATGCAAATTTTTTGATGATGACACTTCCAAGAAGCAGTATCATTGTGAGGGTTGTGGGATCTGCAGGATTGGTGGCCGCGAAAATTTTTTTCACTGTTACAAATGCCGTTGTTGCTATTCTGTAGTATTGAAAAATAGCCACCCCTGTGTGGAAGGTGCTATGCATCATGACTGCCCTGTATGCTTTGAGTATTTATTCGAGTCAAGAAATGGTGTCACAGTTTTGCCATGCGGGCACACGATTCACAGTGACTGCTTGAAGGAAATGCAGGAGCACTATCAATATGCTTGTCCTCTTTGCGCAAAATCAGTTTGTGACATGTCCAAGGTGTGGGAGAAATTTGACATGGAAATTGCAGCAACACCAATGCCTGAGCCATACCAGAACAAGATGGTATCTATCCTTTGCAATGACTGTGGTTCAAAATCAAATGTCCAGTACCATATTGTAGCACAAAAGTGTCCGAACTGCAAGTCCTACAACACTCGCCAAATGAGAGGCTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_13714.p1 GENE.R_Transcript_13714~~R_Transcript_13714.p1 ORF type:complete len:300 (+),score=34.85,zinc_ribbon_6|PF14599.2|2e+03,zinc_ribbon_6|PF14599.2|1.1e+04,zinc_ribbon_6|PF14599.2|1.6e+04,zinc_ribbon_6|PF14599.2|7e+03,zinc_ribbon_6|PF14599.2|5.4e-27,zf-CHY|PF05495.8|4.8e-20,zf-CHY|PF05495.8|1.6e+04,zf-CHY|PF05495.8|6.1e+02,zf-RING_2|PF13639.2|1.6e+04,zf-RING_2|PF13639.2|8.2e+02,zf-RING_2|PF13639.2|1.5e+04,zf-RING_2|PF13639.2|4.7e-09,zf-RING_2|PF13639.2|49,zf-RING_5|PF14634.2|1.6e+04,zf-RING_5|PF14634.2|1.6e+04,zf-RING_5|PF14634.2|3.3e+03,zf-RING_5|PF14634.2|4.6e-08,zf-RING_5|PF14634.2|22,zf-RING_UBOX|PF13445.2|4.1e-07,zf-C3HC4|PF00097.21|1.6e+04,zf-C3HC4|PF00097.21|1.6e+04,zf-C3HC4|PF00097.21|1.6e+04,zf-C3HC4|PF00097.21|1.1e-07,zf-C3HC4|PF00097.21|1.7e+02,zf-C3HC4_2|PF13923.2|7.6e+03,zf-C3HC4_2|PF13923.2|5.7e+02,zf-C3HC4_2|PF13923.2|1.6e+04,zf-C3HC4_2|PF13923.2|2.4e-07,zf-C3HC4_2|PF13923.2|2.4 R_Transcript_13714:1683-2582(+)
METTMKQNSLVQYLERDELQQGVTDTVYLELKASQNTLDSPKDLLDRGYMEYGCQHYRRRCQIRAPCCNEIFDCRHCHNEEMNSIKVDQTKRHEIPRHRVEQVICSLCGTEQEVRQVCINCGVCMGKYFCERCKFFDDDTSKKQYHCEGCGICRIGGRENFFHCYKCRCCYSVVLKNSHPCVEGAMHHDCPVCFEYLFESRNGVTVLPCGHTIHSDCLKEMQEHYQYACPLCAKSVCDMSKVWEKFDMEIAATPMPEPYQNKMVSILCNDCGSKSNVQYHIVAQKCPNCKSYNTRQMRG*

Click here to download the sequence:
Link to NCBI Protein BLAST