Transcript Information: R_Transcript_137685.p1


Annotated TAIR IDAT5G35930.1
Annotated Gene NameAMP-dependent synthetase and ligase family protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:14067197-14074404 | Reverse length=1040
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.2577128573039
Replicate 20.5935349941003
Replicate 30.56659774972815
Condition 2: 8 Hour
Replicate 10.71381055058224
Replicate 20.61235630483812
Replicate 31.042274461418
Condition 3: 24 Hour
Replicate 10.97347592484964
Replicate 20.56501988323917
Replicate 30.88942969575731


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_137685.p1 GENE.R_Transcript_137685~~R_Transcript_137685.p1 ORF type:5prime_partial len:1132 (+),score=222.53,AMP-binding|PF00501.24|2.9e+03,AMP-binding|PF00501.24|8.2e-54,PQQ_3|PF13570.2|0.7,PQQ_3|PF13570.2|0.0015,PQQ_3|PF13570.2|0.007,PQQ_3|PF13570.2|0.0075,PQQ_3|PF13570.2|0.038,PQQ_3|PF13570.2|0.0014,PQQ_3|PF13570.2|9.4,PQQ_3|PF13570.2|0.47,PQQ_2|PF13360.2|7.2e+03,PQQ_2|PF13360.2|3.6e-10,PQQ_2|PF13360.2|2.4e-07,PQQ_2|PF13360.2|4.6e+02,PQQ|PF01011.17|2.1e+03,PQQ|PF01011.17|1.8e+02,PQQ|PF01011.17|0.49,PQQ|PF01011.17|0.00053,PQQ|PF01011.17|5.7e+03,PQQ|PF01011.17|0.27,PQQ|PF01011.17|0.00068,AMP-binding_C|PF13193.2|1.6e+04,AMP-binding_C|PF13193.2|1.6e-11 R_Transcript_137685:3-3398(+)
CTCACTAACCCCAACAAAATAGCCATCATTCAAGCCACCAAACTCCACAAAAACCTTCTTCCTACTGAAACCAACAACAACGACAACAATAATGTTGAAGTTCATCATCTTAACCCTCCAGTCTATGAAGGAGACCAGTGTTACACTTTCTCTGACCTCTTATCTGCGGTTCATTCCTTCAGCAAAAGGCTTCACCATATTCTCAACGGTGGTGATGATCCCTCCTTAATCAAACCCACTCCAGGTAATGATTTTCACAGAAATTTAAACTCTGAAACAAAGATACTTGGAGTTTATATGGTGCCTTCTACTGAATATGTGATTACAGTTCTTTCTATATTAAGGTGTGGTTGGGTCTTTCTTCCTTTAGACCCTTCTTGGCCTAAACAAAGAATCTTGTCTGTTATTTCGTCTTCTAATGCTGATTTGGTTATTGGGTGTTTGAGTTCTGACAAAAAGAGGGGTGCCCATTTGCTTGATACATCTCATTGGCTTTTAGATTCTTGCAAAATCCCAGTTTTGTGTGTTTCTATTGATGGGATTCTTGGACAGGAATTTGGGGCTTTGGATTTGGTTTGGCCTTGTGAAAGTAAACGTTCAAGGTTGTTTAGTTATTTGATGTATACTTCAGGGTCTACTGGGAAGCCCAAAGGTGTTTGTGGGACAGAAGAAGGGATTGTAAATAGGTTTATTTGGATGCAAGAATTGTACCCATTGGAAAATGATGAAGTTTTGCTCTTTAAGACATCTATTAGCTTTGTTGACCATCTTCAAGAATTTCTAGCCCCTATGCTTGCAGGATGTACTTTGGTTGTGCCCCCATTTTATGAGCTGAAGGAGAATTTGTTGGGCCTTGTTGATTGCTTGCATGATTATTCTATCACTAGGATAACAGCTGTCCCATCTTTGATGAGAGCACTTCTTCCTGCACTAGAAAGCTGGAATTTCGAGGGTGATCAGTGTTCCTTGAAGTTGTTGGTGTTGAGTGGTGAAGTTTTCCCCTTAACATTGTGGAGGAGTCTTTCTAGCATATTGCTAAAGACTTCTATCCTGAATATTTATGGAAGCACTGAGGTGTCGGGTGATTGTACTTATTTTGACTGCAAACAGTTGCCAGAACTGCTCGAGGACAAGATGCTGAGCAGTGTTCCTATTGGTGTGTCTATCTCTAATTGTAAGGTTAAGCTTATTGAAGAAGAAGGGAAATGTAACAAAGGTGAGATATGTGTAACAGGAGTTTGTCTTTCGAGTGGTTACTACTCTGAAGGTAATGTCACACCGTTGAACTGTGTGCAACTGACTGAAGATTCTGTGTCTGCGGATAGTGAGCAAAATAATGAAGTTTATTATAGAACAGGTGATTTTGCTAGAAGGCTTCCAAGTGGTGACTTGGTTTTCCTTGAAAGAAAAGACAGGACTGTTAAGGTCAATGGGCAACGTATATCACTTGAAGAGGTAGAGGATACATTAAGAGGAAACCCTGATGTGGCTGATGCTGCTGTAGTTCTCTGCAATCAGCGAGAAGGGCTTGCCTTGCTGGGAGCAGTTCTGGTCTTGAAAGATGAGTCATCTGAAATCATGAAATCAATAAAAAGTTGGATGGTCGATAGACTTCCTTCAGCAATGATTCCAAAGGAACTTATTTGTACTGATGCAATCCCTACGACTTCAACTGGAAAGTTTGATTACACATTGTTAACTAGCTATTTCCCCCCAGTTGATGGTTCAAATGATGGTCATGTTCAACAAACCAAAACTATAGAACAAATCAAAAAAGCCTTTGCTAGTGCTTTGGATGTTGCAGAAGTAGGCAATGACGATGACTTTTTTGTATTTGGTGGCGATTCTATCCTTGCGGCTCATGTTGCTCATAAATTAAGAATTGATATGAGATTGGTATATATGTTCCCGACTCCTTCAATGCTTCAGAAGGCTCTTATGGAAAAAGAAGGCATCGCTAGTGTGGATGGCCATATAAACTGGGAAACATTGCCGAAAACTCAAAAGGTTGATTTGCTTCATTCCTTGGATGCTAGAACAAATTATATTAGGAATAGGAAACTCAGAGAAACAACCCTTAGTGATGAGCACATTAGTCCTAAACACTTTAAGGTGGACAGTGGTGTATATTCGAATGCAAAAGTTACAACCAAAACAGTTAAGTTTCCTTGGGAACCCAACTTAGCATCCATCAAACTTGCGCTCTGCCGTTGCAACAAGGCAATGTACCATAGTAACTGTGAGTTTGGTAATCTGCCGCACAAGGCTTGGGAATTTGATCTCCCAGGAAATAGCAAAGGCTCCTTGCAGGAAATATGGAGAGTTCCTTTGGACTCTTGTGTTGATGCATCACCACTAGTTACTTTTAAGGACGAGGACATTTTAGTATTTATCGGATCTCACTCCCACAAGTTTCGTTGTGTTAATGCCAGAGATGGTTCTGTGATGTGGGAGATAAAACTAGAAGGTCGGATAGAATGTTCTGCAGTAGTGGACGGGGACCTCTCTCAGGCTGTAGTTGGATGCTACCACGGAAAGATATACTTCATTGATATGGTGAAGGGGAACATTAATTGGACTTTCCAAACAGGTGGTGAAGTGAAGTCACAGCCTGCTGTAAACAAATGCAGGCATCTGGTATGGTGTGGATCACATGATCATAATCTGTATGGTCTCAACTATAGAAATTATTCCTGTGTTTGTCAATTTCCTTGTGGAGGAAGCATATTTGGTTCCCCTGCAATTGATGAGGTGCATGATTTACTATACATTGGTACAACCAATGGACGTCTGACATCTATAACTTTGAAGGCGTCAGCTTTTTCTGTACTGTGGTCGCTTGAGCTTGGAGCTCCAGTATTCGGATCTCTGTCTATCAGTTCTGATGGAAATGTCATATGTGGCTTAGTCAGTGGGGATGTTCTTTCTGTTGATCCAACAGGATCCACTGTTTGGAGGGTTAATACGGATGGTCCGATATTTGCTGGACCATGCATATCCAAGGCACTCAGTTCTCATGTTCTCGTGTGCTCTAGGAATGGGAGGGTTTACTCATTTGACGAGGAAAAGGGAAAAATTATGTGGGAGTACAATGCAAAAGATCCAATCACATCTTCAGCATATGTTGATGAAAATATAAAGTTGGCGGATGATCCATCTATGCCCTCGGAAAGATTAGTTTGCATTTGCACCAGTTCAGGAAGCATTCACCTGCTTAAAGTAACCTGCGTTAGTACCCAAGGTGATGAGAAGCCAAAGGAAATGGTTGAGAAATTCGCACAACTTGATCTTCAAGGAGACATATTCTCTTCACCTGTCATGATTGGCGGTCGGATCATTGTAGGTTGCAGGGATGATTATTTGCATTGTATTGCAGCTCACTTTGAGAATGACTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_137685.p1 GENE.R_Transcript_137685~~R_Transcript_137685.p1 ORF type:5prime_partial len:1132 (+),score=222.53,AMP-binding|PF00501.24|2.9e+03,AMP-binding|PF00501.24|8.2e-54,PQQ_3|PF13570.2|0.7,PQQ_3|PF13570.2|0.0015,PQQ_3|PF13570.2|0.007,PQQ_3|PF13570.2|0.0075,PQQ_3|PF13570.2|0.038,PQQ_3|PF13570.2|0.0014,PQQ_3|PF13570.2|9.4,PQQ_3|PF13570.2|0.47,PQQ_2|PF13360.2|7.2e+03,PQQ_2|PF13360.2|3.6e-10,PQQ_2|PF13360.2|2.4e-07,PQQ_2|PF13360.2|4.6e+02,PQQ|PF01011.17|2.1e+03,PQQ|PF01011.17|1.8e+02,PQQ|PF01011.17|0.49,PQQ|PF01011.17|0.00053,PQQ|PF01011.17|5.7e+03,PQQ|PF01011.17|0.27,PQQ|PF01011.17|0.00068,AMP-binding_C|PF13193.2|1.6e+04,AMP-binding_C|PF13193.2|1.6e-11 R_Transcript_137685:3-3398(+)
LTNPNKIAIIQATKLHKNLLPTETNNNDNNNVEVHHLNPPVYEGDQCYTFSDLLSAVHSFSKRLHHILNGGDDPSLIKPTPGNDFHRNLNSETKILGVYMVPSTEYVITVLSILRCGWVFLPLDPSWPKQRILSVISSSNADLVIGCLSSDKKRGAHLLDTSHWLLDSCKIPVLCVSIDGILGQEFGALDLVWPCESKRSRLFSYLMYTSGSTGKPKGVCGTEEGIVNRFIWMQELYPLENDEVLLFKTSISFVDHLQEFLAPMLAGCTLVVPPFYELKENLLGLVDCLHDYSITRITAVPSLMRALLPALESWNFEGDQCSLKLLVLSGEVFPLTLWRSLSSILLKTSILNIYGSTEVSGDCTYFDCKQLPELLEDKMLSSVPIGVSISNCKVKLIEEEGKCNKGEICVTGVCLSSGYYSEGNVTPLNCVQLTEDSVSADSEQNNEVYYRTGDFARRLPSGDLVFLERKDRTVKVNGQRISLEEVEDTLRGNPDVADAAVVLCNQREGLALLGAVLVLKDESSEIMKSIKSWMVDRLPSAMIPKELICTDAIPTTSTGKFDYTLLTSYFPPVDGSNDGHVQQTKTIEQIKKAFASALDVAEVGNDDDFFVFGGDSILAAHVAHKLRIDMRLVYMFPTPSMLQKALMEKEGIASVDGHINWETLPKTQKVDLLHSLDARTNYIRNRKLRETTLSDEHISPKHFKVDSGVYSNAKVTTKTVKFPWEPNLASIKLALCRCNKAMYHSNCEFGNLPHKAWEFDLPGNSKGSLQEIWRVPLDSCVDASPLVTFKDEDILVFIGSHSHKFRCVNARDGSVMWEIKLEGRIECSAVVDGDLSQAVVGCYHGKIYFIDMVKGNINWTFQTGGEVKSQPAVNKCRHLVWCGSHDHNLYGLNYRNYSCVCQFPCGGSIFGSPAIDEVHDLLYIGTTNGRLTSITLKASAFSVLWSLELGAPVFGSLSISSDGNVICGLVSGDVLSVDPTGSTVWRVNTDGPIFAGPCISKALSSHVLVCSRNGRVYSFDEEKGKIMWEYNAKDPITSSAYVDENIKLADDPSMPSERLVCICTSSGSIHLLKVTCVSTQGDEKPKEMVEKFAQLDLQGDIFSSPVMIGGRIIVGCRDDYLHCIAAHFEND*

Click here to download the sequence:
Link to NCBI Protein BLAST