Transcript Information: R_Transcript_138199.p1


Annotated TAIR IDAT5G06860.1
Annotated Gene Namepolygalacturonase inhibiting protein 1
Annotated Gene Symbol(s)PGIP1, ATPGIP1
Annotation TypeHomolog
Chromosome Positionchr5:2132373-2133434 | Forward length=330
E-Value6E-47
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.93845557607809
Replicate 20.64770078405033
Replicate 30.88329322350202
Condition 2: 8 Hour
Replicate 11.1959676966521
Replicate 21.0346937612888
Replicate 31.026569238171
Condition 3: 24 Hour
Replicate 10.5311574937001
Replicate 20.9071571780186
Replicate 31.519198011687


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_138199.p1 GENE.R_Transcript_138199~~R_Transcript_138199.p1 ORF type:complete len:389 (+),score=43.87,LRR_8|PF13855.2|1e+03,LRR_8|PF13855.2|1.1e-09,LRR_8|PF13855.2|1.7e-11,LRR_8|PF13855.2|4,LRR_8|PF13855.2|0.048,LRR_8|PF13855.2|2.7e+03,LRR_4|PF12799.3|28,LRR_4|PF12799.3|0.027,LRR_4|PF12799.3|5e-05,LRR_4|PF12799.3|0.0073,LRR_4|PF12799.3|0.006,LRR_4|PF12799.3|0.011,LRR_4|PF12799.3|12,LRR_4|PF12799.3|5,LRR_1|PF00560.29|1.6e+04,LRR_1|PF00560.29|2.3e+03,LRR_1|PF00560.29|5.9e+03,LRR_1|PF00560.29|0.023,LRR_1|PF00560.29|4.9e+02,LRR_1|PF00560.29|21,LRR_1|PF00560.29|0.00038,LRR_1|PF00560.29|2.6e+02,LRR_1|PF00560.29|2.1e+02,LRR_1|PF00560.29|40 R_Transcript_138199:75-1241(+)
ATGGATATAAGCCCTCTAAAATTCCACCACCTATTCTTTTCCTTCCTCCTTTTTTCTCAGCTTTTCCAATCAAGTCTTTCTTCTGATGATCTTTCCCCCACTACAAAAGTTCATCGCTATGATAGAAAGGTACTTGTCCGAATTCAAAACCATTTTGGCAACAAATCGCCAATGTGGACCTCCTTGAATGACTGCTGCGTCTACCCTTGTGACGAGAAGTCCATGGTGTGTGACAAAAACGGTCATGTCATTCAGCTCAGTCTCACCTCTAATCGAACTTTGTCTGGCGAGATCCCCACCTTGCTTGGGGATCTCGTCTTCCTCCAAGACCTCTGGATATGGGGCTCGTTTTTCACGGGCCCCATTCCCAAGACCTTGGGGAAGTTAACCAACCTCCGTTCATTGTTGGTGGCTAACACCAGCATGACGGGCATGGTACCTGAGTCCCTAGGCCGACTGAAGAATCTACAAGTACTCGAACTTAGAAACAACAGCTTCACCGGCCCTATCCCAGAGTCATTCTCCAAGCTCATGAACCTTGAAACACTTGTTCTTTCCACAAACAAGTTGTATGGCTCAATACCTGATTTTCTTGGCTACATGAGAAACCTCAAATGGGTTTCTCTTGATTCCAATAGATTTTCTGGTTCGATCCCAGCTTCTCTAGGTCACCTCTACAACCTTCAGTCCTTGGATCTTTCTCATAATCAACTTACTGGCTTGATTCCAAAGAGCTTTGGGTCCTTGAATAAGGTTTCATCCCTTATGTTGAATGACAACCAAATAACCGGGCTGATCCCCAATGTTGCTCAAGCTGTTGTTGAGACATTTGATGTTTCTGGCAATAAGCTCACCGATGCCTCTTCTTTGTTTCAAAGCAACGACTTTGGACCATACGCTATTAACCTTAGCAACAATCGTCTCAAGTTTGATTTCTCAACAGCCAAGTTTTACAAGTATCTTGTTGATCTGAATATAAGCCATAATATGATATATGGCTCTCTACCTAAAGGATTGGAAAAGTTGTCTTTGGTGGCATTTGATGCGAGTTATAATCAGCTTTGTGGACACATCCCAAATAGTCGAGATTTGAAGCGGCTTAGCCCAATTAACTTTGCCCACAACAAATGTCTGTGTGGTGCTCCTTTATCCCCTTGTAACAAGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_138199.p1 GENE.R_Transcript_138199~~R_Transcript_138199.p1 ORF type:complete len:389 (+),score=43.87,LRR_8|PF13855.2|1e+03,LRR_8|PF13855.2|1.1e-09,LRR_8|PF13855.2|1.7e-11,LRR_8|PF13855.2|4,LRR_8|PF13855.2|0.048,LRR_8|PF13855.2|2.7e+03,LRR_4|PF12799.3|28,LRR_4|PF12799.3|0.027,LRR_4|PF12799.3|5e-05,LRR_4|PF12799.3|0.0073,LRR_4|PF12799.3|0.006,LRR_4|PF12799.3|0.011,LRR_4|PF12799.3|12,LRR_4|PF12799.3|5,LRR_1|PF00560.29|1.6e+04,LRR_1|PF00560.29|2.3e+03,LRR_1|PF00560.29|5.9e+03,LRR_1|PF00560.29|0.023,LRR_1|PF00560.29|4.9e+02,LRR_1|PF00560.29|21,LRR_1|PF00560.29|0.00038,LRR_1|PF00560.29|2.6e+02,LRR_1|PF00560.29|2.1e+02,LRR_1|PF00560.29|40 R_Transcript_138199:75-1241(+)
MDISPLKFHHLFFSFLLFSQLFQSSLSSDDLSPTTKVHRYDRKVLVRIQNHFGNKSPMWTSLNDCCVYPCDEKSMVCDKNGHVIQLSLTSNRTLSGEIPTLLGDLVFLQDLWIWGSFFTGPIPKTLGKLTNLRSLLVANTSMTGMVPESLGRLKNLQVLELRNNSFTGPIPESFSKLMNLETLVLSTNKLYGSIPDFLGYMRNLKWVSLDSNRFSGSIPASLGHLYNLQSLDLSHNQLTGLIPKSFGSLNKVSSLMLNDNQITGLIPNVAQAVVETFDVSGNKLTDASSLFQSNDFGPYAINLSNNRLKFDFSTAKFYKYLVDLNISHNMIYGSLPKGLEKLSLVAFDASYNQLCGHIPNSRDLKRLSPINFAHNKCLCGAPLSPCNK*

Click here to download the sequence:
Link to NCBI Protein BLAST