Transcript Information: R_Transcript_138374.p1


Annotated TAIR IDAT5G09960.1
Annotated Gene NameFUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RPM1-interacting protein 4, defence response (InterPro:IPR008700); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G64850.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:3106503-3107658 | Forward length=112
E-Value9.6E-41
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 1218.67763026143
Replicate 2209.96300416298
Replicate 3217.83858302223
Condition 2: 8 Hour
Replicate 195.062769795187
Replicate 2129.78080441159
Replicate 3170.83868819188
Condition 3: 24 Hour
Replicate 1135.2710014103
Replicate 2154.60304026238
Replicate 3141.62632444463


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_138374.p1 GENE.R_Transcript_138374~~R_Transcript_138374.p1 ORF type:5prime_partial len:102 (+),score=20.46 R_Transcript_138374:3-308(+)
TCTCTAATGGAGGATCGCAAGGAGAAAAATTCACCATGGTTATCCGTGCCACAATTCGGAGACTGGGACCAGAAGGGACCATTGCCAGATTACTCTCTTGATTTCTCAAAAATCAGAGAAATGAGGAAACAGAACAAAAGAGACCCTTCAAGGGCGAGTCTTGGTAATGAAGATGAGTTCATCAATCCTACTGCTCCTGCTAATAATAAACCAAGCAATGACGACAATCACCATTTTGATCAAAGTCACCCTACAACTACAAGAAAGAGCTTCCTCAGTTACTTCAATTGCTGTGTCAGAGCCTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_138374.p1 GENE.R_Transcript_138374~~R_Transcript_138374.p1 ORF type:5prime_partial len:102 (+),score=20.46 R_Transcript_138374:3-308(+)
SLMEDRKEKNSPWLSVPQFGDWDQKGPLPDYSLDFSKIREMRKQNKRDPSRASLGNEDEFINPTAPANNKPSNDDNHHFDQSHPTTTRKSFLSYFNCCVRA*

Click here to download the sequence:
Link to NCBI Protein BLAST