Transcript Information: R_Transcript_138800.p1


Annotated TAIR IDAT1G04240.1
Annotated Gene NameAUX/IAA transcriptional regulator family protein
Annotated Gene Symbol(s)SHY2, IAA3
Annotation TypeOrtholog
Chromosome Positionchr1:1128564-1129319 | Reverse length=189
E-Value1.1E-78
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 162.296175198692
Replicate 258.601614594742
Replicate 363.249947093854
Condition 2: 8 Hour
Replicate 152.869977050271
Replicate 268.417623543926
Replicate 379.379431519006
Condition 3: 24 Hour
Replicate 161.106601327471
Replicate 270.774338230957
Replicate 363.267444890982


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_138800.p1 GENE.R_Transcript_138800~~R_Transcript_138800.p1 ORF type:complete len:201 (+),score=52.58,AUX_IAA|PF02309.12|2.2e-60 R_Transcript_138800:266-868(+)
ATGGCAAGGACAACGACATACGAAAATGATCTACATCTTGATGCAACAGAGCTCAGATTAGGATTGCCGGGGAGCAACAATGAGCAGGATAAACAATCAACTTCTGCTGATGCCACTAAGAGCAACAAGAGAGCATCACCTGATATGCCTGAGGACTCTTTATCAACCAACAACTCCAGTGTCTCTGATGCCAGGAATGAAGATTGCCCTCCTCCTTCAAAGGCGCAAATTGTGGGATGGCCACCAGTCAGATCTTACAGGAAGAACAGCCTCCAGCCAAAGAAAACCGAGCAACAGCCTGACGCATCTGGAATGTATGTAAAAGTAAGCATGGATGGAGCACCATACCTAAGGAAGATTGACCTGAAGGTCTACCAAAGTTATGAAGAGCTGCTACATGCCTTGGGAAGTATGTTCAAGGTTTGCATTGGAAAATACTCAGAAAGAGATGGCTACAACGGGTCAGAGTACGCCCCAACTTATGAAGACAAAGATGGTGACTGGATGCTGGTTGGAGATGTACCATGGGAGATGTTCTTCTCCTCTTGCAAGAGGCTAAGGATCATGAAATCTTCAGAAGCAAAGGGTCTTGGGTGTCTATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_138800.p1 GENE.R_Transcript_138800~~R_Transcript_138800.p1 ORF type:complete len:201 (+),score=52.58,AUX_IAA|PF02309.12|2.2e-60 R_Transcript_138800:266-868(+)
MARTTTYENDLHLDATELRLGLPGSNNEQDKQSTSADATKSNKRASPDMPEDSLSTNNSSVSDARNEDCPPPSKAQIVGWPPVRSYRKNSLQPKKTEQQPDASGMYVKVSMDGAPYLRKIDLKVYQSYEELLHALGSMFKVCIGKYSERDGYNGSEYAPTYEDKDGDWMLVGDVPWEMFFSSCKRLRIMKSSEAKGLGCL*

Click here to download the sequence:
Link to NCBI Protein BLAST