Transcript Information: R_Transcript_138802.p1


Annotated TAIR IDAT1G04240.1
Annotated Gene NameAUX/IAA transcriptional regulator family protein
Annotated Gene Symbol(s)SHY2, IAA3
Annotation TypeOrtholog
Chromosome Positionchr1:1128564-1129319 | Reverse length=189
E-Value2.7E-69
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.9631430121297
Replicate 22.7267922618569
Replicate 31.6361955425823
Condition 2: 8 Hour
Replicate 16.3599649213624
Replicate 27.550427634686
Replicate 36.4827180787096
Condition 3: 24 Hour
Replicate 14.0250700983637
Replicate 24.010047071014
Replicate 34.9744783379312


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_138802.p1 GENE.R_Transcript_138802~~R_Transcript_138802.p1 ORF type:complete len:154 (+),score=32.11,AUX_IAA|PF02309.12|9.7e-58 R_Transcript_138802:562-1023(+)
ATGCATAGAAATAGAGAAAGAAAAACAAATCAGAAACAGATGAATGTGAAAACTTACAATTGTGTGATTCAATATTGCAGGGCGCAAATTGTGGGATGGCCACCAGTCAGATCTTACAGGAAGAACAGCCTCCAGCCAAAGAAAACCGAGCAACAGCCTGACGCATCTGGAATGTATGTAAAAGTAAGCATGGATGGAGCACCATACCTAAGGAAGATTGACCTGAAGGTCTACCAAAGTTATGAAGAGCTGCTACATGCCTTGGGAAGTATGTTCAAGGTTTGCATTGGAAAATACTCAGAAAGAGATGGCTACAACGGGTCAGAGTACGCCCCAACTTATGAAGACAAAGATGGTGACTGGATGCTGGTTGGAGATGTACCATGGGAGATGTTCTTCTCCTCTTGCAAGAGGCTAAGGATCATGAAATCTTCAGAAGCAAAGGGTCTTGGGTGTCTATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_138802.p1 GENE.R_Transcript_138802~~R_Transcript_138802.p1 ORF type:complete len:154 (+),score=32.11,AUX_IAA|PF02309.12|9.7e-58 R_Transcript_138802:562-1023(+)
MHRNRERKTNQKQMNVKTYNCVIQYCRAQIVGWPPVRSYRKNSLQPKKTEQQPDASGMYVKVSMDGAPYLRKIDLKVYQSYEELLHALGSMFKVCIGKYSERDGYNGSEYAPTYEDKDGDWMLVGDVPWEMFFSSCKRLRIMKSSEAKGLGCL*

Click here to download the sequence:
Link to NCBI Protein BLAST