Transcript Information: R_Transcript_138942.p1


Annotated TAIR IDAT5G53110.1
Annotated Gene NameRING/U-box superfamily protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:21529022-21533008 | Forward length=382
E-Value6E-42
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.5407051878363
Replicate 21.5381905066885
Replicate 33.7758358674976
Condition 2: 8 Hour
Replicate 12.6907543898072
Replicate 21.9657918102141
Replicate 32.4601083991001
Condition 3: 24 Hour
Replicate 13.1114976828757
Replicate 22.3428663290357
Replicate 31.7638443337426


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_138942.p1 GENE.R_Transcript_138942~~R_Transcript_138942.p1 ORF type:complete len:273 (+),score=18.22,zf-RING_2|PF13639.2|1.1e+04,zf-RING_2|PF13639.2|5.9e+03,zf-RING_2|PF13639.2|9.5e+02,zf-RING_2|PF13639.2|3e-12,zf-RING_11|PF17123.1|4.9e+03,zf-RING_11|PF17123.1|3.8e+03,zf-RING_11|PF17123.1|7.6e-09,zf-rbx1|PF12678.3|9.5e+03,zf-rbx1|PF12678.3|2.5e-06 R_Transcript_138942:837-1655(+)
ATGTCACTCAAGGATCCAATTGGGAATTGCTTACCAAAGCGACTTCTCACCCTTAATCTCTCTAGAACCCCATTTACAGTACCAAATAACCAGACTTTGTTATTGTATAAGTGTACAAAGGGTTATGTTTCTGAGTTTTTGGTGCCTATCAGTTGCCTAGGGGGTGCAAATTATAGCGTTATGTCTAGTTTTTCAAAGCGAAATAAGGAGGTTTTGTCGAAGTGTCAAGACTGTGGTTCAATTGTGGTGTCAAGTGGAATGTATATAGTTGATGTGGTTGATGAACTTCGACTTATATGGATTCAACCTGATTGTTCGCAGTGTTATATTGGTGGTGGAAAATGCGGGTTAAAAAGAAGTTCTGGTTCTAAAGTTGTATGCACAGGAATTTCAGTGACTTCACCCTATGCCTTCATCTTTGCATTCATTGTGCCGGTGATTCTGTTCATGCTGGGTTCATTTTGCTTGATTTGCGTAAGGGACAACCACCACCACAACACAGATTGGACAACAAGCGGAACTCATCTATTAGAGCTAATAGGTATGCCATCAATTCAGCACCAAGCAAATCGTGGGCTTGATCAGCTTACCATCGACTCATACCCGGTGGTTGTACTTGACGAGACAAAGATTCTACCTAGTCAGCATTACAACCATGACAATAGCTGTTCAATATGTTTGTCGGACTACCAGCCTGAGGAGTCCCTAAGAACTTTGCCAGGTTGCCACCATTGCTTCCATGCTTCTTGTATCGATCAATGGCCTCGTTTGAAGGCCATCTGCCCTGTCTGCCGCCTTTCCCTGCCTCCCTTAAGTTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_138942.p1 GENE.R_Transcript_138942~~R_Transcript_138942.p1 ORF type:complete len:273 (+),score=18.22,zf-RING_2|PF13639.2|1.1e+04,zf-RING_2|PF13639.2|5.9e+03,zf-RING_2|PF13639.2|9.5e+02,zf-RING_2|PF13639.2|3e-12,zf-RING_11|PF17123.1|4.9e+03,zf-RING_11|PF17123.1|3.8e+03,zf-RING_11|PF17123.1|7.6e-09,zf-rbx1|PF12678.3|9.5e+03,zf-rbx1|PF12678.3|2.5e-06 R_Transcript_138942:837-1655(+)
MSLKDPIGNCLPKRLLTLNLSRTPFTVPNNQTLLLYKCTKGYVSEFLVPISCLGGANYSVMSSFSKRNKEVLSKCQDCGSIVVSSGMYIVDVVDELRLIWIQPDCSQCYIGGGKCGLKRSSGSKVVCTGISVTSPYAFIFAFIVPVILFMLGSFCLICVRDNHHHNTDWTTSGTHLLELIGMPSIQHQANRGLDQLTIDSYPVVVLDETKILPSQHYNHDNSCSICLSDYQPEESLRTLPGCHHCFHASCIDQWPRLKAICPVCRLSLPPLS*

Click here to download the sequence:
Link to NCBI Protein BLAST