Transcript Information: R_Transcript_139180.p1


Annotated TAIR IDAT3G17930.1
Annotated Gene Nameunknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3007 (InterPro:IPR021562); Has 236 Blast hits to 236 proteins in 83 species: Archae - 0; Bacteria - 117; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 80 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr3:6142307-6143246 | Reverse length=190
E-Value1.2E-54
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 127.457445538722
Replicate 228.892345017299
Replicate 329.563396384778
Condition 2: 8 Hour
Replicate 132.64781992966
Replicate 238.605966939483
Replicate 326.218993118337
Condition 3: 24 Hour
Replicate 143.560967560259
Replicate 239.963375083781
Replicate 333.299243027929


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_139180.p1 GENE.R_Transcript_139180~~R_Transcript_139180.p1 ORF type:5prime_partial len:117 (+),score=26.87,DUF3007|PF11460.4|3.7e-34 R_Transcript_139180:1-351(+)
CCTTTTGGATACACTAGGAAGGATGTGCTGTTGATTGGGTTAGGAGTGACTCTTTTTGGAGTGGCCTTGAAAAATGGATTGGAGTTTGTTGGAGTTGATCCCTTACAAGCAGGGAATGTTGTTCAGTTGGTAATAGTCTTAGGCATGACTGTTGGATGGATCTCAACATATATGTTCAGGGTTGCAAGCAAAGACATGACATACGCCAAGCAGTTACGGGACTATGAGAGCAAAGTTATGGAGAAACGGTTGGAGGGTCTTACGGAAGCAGAATTGCAAGTATTACTTGAACAAGTTGAGGAAGAAAAAAGACGTCTCAATGATGGTGAGAAGGTTAATCAAATCATGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_139180.p1 GENE.R_Transcript_139180~~R_Transcript_139180.p1 ORF type:5prime_partial len:117 (+),score=26.87,DUF3007|PF11460.4|3.7e-34 R_Transcript_139180:1-351(+)
PFGYTRKDVLLIGLGVTLFGVALKNGLEFVGVDPLQAGNVVQLVIVLGMTVGWISTYMFRVASKDMTYAKQLRDYESKVMEKRLEGLTEAELQVLLEQVEEEKRRLNDGEKVNQIM*

Click here to download the sequence:
Link to NCBI Protein BLAST