Transcript Information: R_Transcript_140223.p1


Annotated TAIR IDAT5G11310.1
Annotated Gene NamePentatricopeptide repeat (PPR) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:3606490-3608409 | Forward length=602
E-Value6.4E-150
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.7368734472483
Replicate 21.0897733780085
Replicate 31.5456103222317
Condition 2: 8 Hour
Replicate 11.3556188206087
Replicate 21.4700925777942
Replicate 31.4445918486813
Condition 3: 24 Hour
Replicate 11.4696174176904
Replicate 21.0684208459103
Replicate 31.8176640570434


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_140223.p1 GENE.R_Transcript_140223~~R_Transcript_140223.p1 ORF type:complete len:578 (+),score=78.54,PPR_2|PF13041.2|39,PPR_2|PF13041.2|3.3e+02,PPR_2|PF13041.2|2.7e+02,PPR_2|PF13041.2|2.8e-08,PPR_2|PF13041.2|4.9e-07,PPR_2|PF13041.2|4.7e-10,PPR_2|PF13041.2|2e-09,PPR_2|PF13041.2|7.3e-05,PPR_2|PF13041.2|1.7e-06,PPR_1|PF12854.3|1.6e+02,PPR_1|PF12854.3|0.43,PPR_1|PF12854.3|0.11,PPR_1|PF12854.3|2.3e-08,PPR_1|PF12854.3|1.2,PPR_1|PF12854.3|1.1e-06,PPR_1|PF12854.3|78,PPR_1|PF12854.3|0.0027,PPR_1|PF12854.3|1.2,PPR_1|PF12854.3|1.1e+02,PPR|PF01535.16|0.35,PPR|PF01535.16|4.4e+02,PPR|PF01535.16|96,PPR|PF01535.16|0.0083,PPR|PF01535.16|4e-06,PPR|PF01535.16|2.3,PPR|PF01535.16|9.5e-07,PPR|PF01535.16|1.1,PPR|PF01535.16|0.055,PPR|PF01535.16|2.6,PPR|PF01535.16|1.8e+03,PPR_3|PF13812.2|1.2e+02,PPR_3|PF13812.2|3.7e+03,PPR_3|PF13812.2|22,PPR_3|PF13812.2|0.0052,PPR_3|PF13812.2|0.0056,PPR_3|PF13812.2|2.2e+02,PPR_3|PF13812.2|0.0012,PPR_3|PF13812.2|2.5e+03,PPR_3|PF13812.2|3.4,PPR_3|PF13812.2|34,PPR_3|PF13812.2|1.3e+04 R_Transcript_140223:2-1735(+)
ATGCATCGATGTTCACTCCTCTCTGTAACCTTAATCCGCCCCATATCAATATTCAATCCAAAGCTCTCTAATTTGACATTCAAACTCCTCTGTAATCAAGCATCATGCCCAAATCACCCAGATTTTCCTGTACCCAATTCCAAAGTCGAGTCTTCTCCCTCCAATCCCATAAACCCTAACCCTAATTTAAGGTGTTTCGAAATTCTCTCTACCCTTTTGAAGAATTGGGATCTTTTACCCGTTTCAGACCTCGAACATGCTCTAAACGAGACTAGAATTGTATCCAATTCATCTCTTTTACTGGCAATCTTCAAACAACTTTATTTATCACCAAAACAGGCATTTTTTCTATTCAAATGGGCTGAGAAAAGAATTGGGTACTACCCATCTGCTCCAATATTCAATTCAATGATTACCATCCTCACAAAATCAGGCGAATTCAAATGGGCATTGATGGTCTTGTTCAATTTGATCAAGAACTGTGATGGGTCTGATTTGGTTTTAGCTGAAAGCTTGGGGATTTTGATAAAACATTATGCTCTTTCAGGTATGATTTTTCCGGCTATTAAAATTTATAAGCTTGGTAATAGTTTAAATATTGAAACTTTTGAAGTTTTGGTAGTTGCATTGTGTAAATATGGGCATGTTGAAGTAGCTTCTGAGTGTATCGATAAGAAAATGTATGTGAACCCCAATTGGGTTCCTTCAATTGATGTGTACAATATGTTATTAGATGGGTGGTTTCGAGTAGGGAATGTTAAACAAGTCGAGAAGGTTTGGTTGCGAATGAAAAGAGAGAAATTGGTTTATGAAGTTGTTAGTTATGGTATAATTGTTGAAGGATTTTGTAGGATGGGTTGTGTTGATAGGGCCCTTGAATTGCTTGGTGAAATGAGGAGATATGATGTTGGGCCGAACAAGGAGGTGTATGGTCCGATGGTGGATGCTTTAGCTGGAGCTGGGAGGCTTAATGAGGCGCTAGGGATGTTGGAGAGGTTTCTAGTTCTAGAATCAGGTCCTACTTTTTCGACTTATAACTCTTTGGTTAAGGGGTTTTGTAAAGTGGGTGATCTTGATGGCGCGAATAGAATTATCAAGATGATGACTAGTAGGGGGTTTGTGCCTACTATTATGACATATAATTACTTCTTTAGGTACTTTGCGGGACATGAGAAAGCTGAAGAGGGACTGAATCTTTACAGAAAGATGGTTGAATTGGGGTATGAACCGGATCAATTTACATTTCGTTTGTTGTTGAAGATGTTGTGTGAGGAAGAGAGGTTGGAATTAGCTTTACAGATTACCAAGGAGATGAGATCAAATGGGTACGTTTTAGACTTGGGCACAAGCACAATGTTGATCAATCTGTTGTGTAAAGTGCACAGATTTCAAGAGGCAGTTTCAGAATTCGAGGATTTGGTCCAGAGAGGTGTTGTTCCGAAATTTGTTACTTACCAGACGCTGTATAATGAGCTTAAGAAGAAGGGATTGCATGAATTGGCTCGGAAGCTTTCTGATTTGGCAGCCATCATTCCATCCTTTGCAACATCACAAACTACATTTGAAGGACTTAACCCCATGTCCCATCAAAGGCGAAAAGTTATCATGCAGAGAGCTAAGGCAATGTCTGATACTCTGAAGGCATGTTCAGACCCTATAGAACTTTCCAAACATAGAAAATCTCCGAAGAATGCTTTAGCTAGTGAAAAGAAGTTCAGAAGGGCAAAGAGTTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_140223.p1 GENE.R_Transcript_140223~~R_Transcript_140223.p1 ORF type:complete len:578 (+),score=78.54,PPR_2|PF13041.2|39,PPR_2|PF13041.2|3.3e+02,PPR_2|PF13041.2|2.7e+02,PPR_2|PF13041.2|2.8e-08,PPR_2|PF13041.2|4.9e-07,PPR_2|PF13041.2|4.7e-10,PPR_2|PF13041.2|2e-09,PPR_2|PF13041.2|7.3e-05,PPR_2|PF13041.2|1.7e-06,PPR_1|PF12854.3|1.6e+02,PPR_1|PF12854.3|0.43,PPR_1|PF12854.3|0.11,PPR_1|PF12854.3|2.3e-08,PPR_1|PF12854.3|1.2,PPR_1|PF12854.3|1.1e-06,PPR_1|PF12854.3|78,PPR_1|PF12854.3|0.0027,PPR_1|PF12854.3|1.2,PPR_1|PF12854.3|1.1e+02,PPR|PF01535.16|0.35,PPR|PF01535.16|4.4e+02,PPR|PF01535.16|96,PPR|PF01535.16|0.0083,PPR|PF01535.16|4e-06,PPR|PF01535.16|2.3,PPR|PF01535.16|9.5e-07,PPR|PF01535.16|1.1,PPR|PF01535.16|0.055,PPR|PF01535.16|2.6,PPR|PF01535.16|1.8e+03,PPR_3|PF13812.2|1.2e+02,PPR_3|PF13812.2|3.7e+03,PPR_3|PF13812.2|22,PPR_3|PF13812.2|0.0052,PPR_3|PF13812.2|0.0056,PPR_3|PF13812.2|2.2e+02,PPR_3|PF13812.2|0.0012,PPR_3|PF13812.2|2.5e+03,PPR_3|PF13812.2|3.4,PPR_3|PF13812.2|34,PPR_3|PF13812.2|1.3e+04 R_Transcript_140223:2-1735(+)
MHRCSLLSVTLIRPISIFNPKLSNLTFKLLCNQASCPNHPDFPVPNSKVESSPSNPINPNPNLRCFEILSTLLKNWDLLPVSDLEHALNETRIVSNSSLLLAIFKQLYLSPKQAFFLFKWAEKRIGYYPSAPIFNSMITILTKSGEFKWALMVLFNLIKNCDGSDLVLAESLGILIKHYALSGMIFPAIKIYKLGNSLNIETFEVLVVALCKYGHVEVASECIDKKMYVNPNWVPSIDVYNMLLDGWFRVGNVKQVEKVWLRMKREKLVYEVVSYGIIVEGFCRMGCVDRALELLGEMRRYDVGPNKEVYGPMVDALAGAGRLNEALGMLERFLVLESGPTFSTYNSLVKGFCKVGDLDGANRIIKMMTSRGFVPTIMTYNYFFRYFAGHEKAEEGLNLYRKMVELGYEPDQFTFRLLLKMLCEEERLELALQITKEMRSNGYVLDLGTSTMLINLLCKVHRFQEAVSEFEDLVQRGVVPKFVTYQTLYNELKKKGLHELARKLSDLAAIIPSFATSQTTFEGLNPMSHQRRKVIMQRAKAMSDTLKACSDPIELSKHRKSPKNALASEKKFRRAKS*

Click here to download the sequence:
Link to NCBI Protein BLAST