Transcript Information: R_Transcript_140565.p1


Annotated TAIR IDAT5G11620.1
Annotated Gene NameSWIM zinc finger family protein / mitogen-activated protein kinase kinase kinase (MAPKKK)-related
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:3739076-3740127 | Reverse length=273
E-Value2.9E-49
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 13.0664974403927
Replicate 22.0996300416298
Replicate 33.298570213846
Condition 2: 8 Hour
Replicate 12.5465299545135
Replicate 22.5938622935775
Replicate 33.7755350090405
Condition 3: 24 Hour
Replicate 14.1324053009867
Replicate 22.3819679601824
Replicate 34.6401933936222


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_140565.p1 GENE.R_Transcript_140565~~R_Transcript_140565.p1 ORF type:complete len:250 (+),score=20.53,zf-RING_2|PF13639.2|2.2e+03,zf-RING_2|PF13639.2|1.8e-07,SWIM|PF04434.13|1.6e-06 R_Transcript_140565:156-905(+)
ATGGAACCATATACCCGCAATCCCTCACCAGCATTAGACCACAACCGAGAAAGGGGTCGTAGTAGGCCCTACTACGAGCCCATCCATTTTGTGAACCGGGTTGCAAGGGCTATGAACCATCGTCTCCTTCTCCTATATAGATCCGACCCTGATTTCTACGTGCTAGGAGCGACAGGGAATGTATACACGGTCAAGCTATGGACCAACATTACATGTACATGCCCTGACCGTGCCACCCCTTGCAAGCACATCCTATTTGTGCTCATCAAGGTTCTTGGACTTTCCCTAGATGATGAATGCCTAAAGAGACGAACCCTGAGGCCCTGTCAAGTGGCTCGGCTCCTGGCTAACCCTACCTCCCCCGAGTCCCTTGCTGGGCCTTCCCTTCGCGAGAGGTTCCACCAGCTATTTTTGCTCCAAAGGGAACTCGGAGGGACATGCCACACCCCGTGTAGGGGTGTGGATGAAGGTTCCTTGTGTCCTATATGCCTCGACGAGATGGGGAAGGCAGGGGATAGGCTAGTCGCCTGTGGGACATGTCGAAACACTTTGCATGAAGAATGCTTGTTAACTTGGAAAAGAACTCAATTGAGAAGATCAGTTAGCTGTGTGATTTGTAGGTCAAGGTGGAGAGACAGGGCTGATCAAGAAAGGTATATCAATCTAGCTGCTTATATCAGTGAAGATGATTTGGCTTCTCCTCCTACAAATGGTGCTGCTGATCAAGGGACTACTTGTAGTGATGAATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_140565.p1 GENE.R_Transcript_140565~~R_Transcript_140565.p1 ORF type:complete len:250 (+),score=20.53,zf-RING_2|PF13639.2|2.2e+03,zf-RING_2|PF13639.2|1.8e-07,SWIM|PF04434.13|1.6e-06 R_Transcript_140565:156-905(+)
MEPYTRNPSPALDHNRERGRSRPYYEPIHFVNRVARAMNHRLLLLYRSDPDFYVLGATGNVYTVKLWTNITCTCPDRATPCKHILFVLIKVLGLSLDDECLKRRTLRPCQVARLLANPTSPESLAGPSLRERFHQLFLLQRELGGTCHTPCRGVDEGSLCPICLDEMGKAGDRLVACGTCRNTLHEECLLTWKRTQLRRSVSCVICRSRWRDRADQERYINLAAYISEDDLASPPTNGAADQGTTCSDE*

Click here to download the sequence:
Link to NCBI Protein BLAST