Transcript Information: R_Transcript_140908.p1


Annotated TAIR IDAT1G12300.1
Annotated Gene NameTetratricopeptide repeat (TPR)-like superfamily protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:4184163-4186076 | Reverse length=637
E-Value8E-54
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.16058323420574
Replicate 20.12314545698708
Replicate 30
Condition 2: 8 Hour
Replicate 10
Replicate 20
Replicate 30.21292211871422
Condition 3: 24 Hour
Replicate 10.26929979152732
Replicate 20.25871271425897
Replicate 30.25674726905451


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_140908.p1 GENE.R_Transcript_140908~~R_Transcript_140908.p1 ORF type:complete len:341 (+),score=37.55,PPR_2|PF13041.2|8.3e-05,PPR_2|PF13041.2|1.5e-08,PPR_2|PF13041.2|1.8e-12,PPR_2|PF13041.2|5.6e-16,PPR_2|PF13041.2|4.9e-12,PPR_2|PF13041.2|1.1e-15,PPR_2|PF13041.2|0.00043,PPR_1|PF12854.3|0.0026,PPR_1|PF12854.3|1.2e-05,PPR_1|PF12854.3|5.1e-13,PPR_1|PF12854.3|1.6e-06,PPR_1|PF12854.3|1.2e-08,PPR_1|PF12854.3|2.8e-08,PPR|PF01535.16|36,PPR|PF01535.16|0.0026,PPR|PF01535.16|0.0018,PPR|PF01535.16|2.4e-10,PPR|PF01535.16|0.00018,PPR|PF01535.16|8.9e-05,PPR|PF01535.16|0.00084,PPR_3|PF13812.2|39,PPR_3|PF13812.2|0.051,PPR_3|PF13812.2|50,PPR_3|PF13812.2|1.7e-05,PPR_3|PF13812.2|0.11,PPR_3|PF13812.2|0.00011,PPR_3|PF13812.2|6.3 R_Transcript_140908:62-1084(+)
ATGATGAATATGGTGGTGCATGTGCTCCGCAACGGTAACATTTCTCGCCTTTGCTTCGCATCTTCCTTCAATACTAACATAATTGCTACTTCTTTTCCCTTTCATTGTCGTTGTTTTGGTAATTTGAGACATGTAAACAAAACCCTAGTGCCAGAAAATCAAAATGGGTTCATGTTTAATAACGTTAATGATGCCGTTTCCCACCTTAATCACTTGCTTCAGGTTCGTCCCAACCCACCTATGGCTGCTATACATTCAGTTCTGTCATGTATTGTCAAAATGGGGCATTATTCCACCGTGCTTACCCTCTTTAAGATGATGGGTTTCTTGCAATTTTCCCCTGATTTATATTCCCTCAACATAGTAATCAATTGTTATTGCCACTTGGGTCGCGTTGAGTTGGGTTTCTCTGTTATGGGAAATATCATCAAGCTTGGTTTTGAGCCTAAAATTGTAACCTTCACCCCTTTGATACGCGGCCTTTGTGCAAACAACAAATATGTTGATGCAGTTGAGATATTCCACAAGGTTGGTGATCAGGGTTTGCCATTGGACCTGTTTACTTATAACACCTTAATTAATGGCCTTTGTAAATTAGGCCTTTTTGTTGAAGCCTTTGACGTACTTGAGGAGATGGAGTGTCATGGTTGTATGCCCGATGCTGTCACATTTAGTTCTATCATTGACAGTCTTATCAAGCGTAAGCTATTATCCGAGGCTATAAATCTTTTCTCGTTGATGATCAGCAAACGCATTACTCCTAATGTTGTCACTTACAATTGCTTCTTATGGGGACTTTGTAACGCTGGGCAATGGGATAGTGCCAACAGGCTACTTCAAGAAATGTTTGATGCCAAAATTGCACCAGATAACTGCACTTTCAACATATTAGTTGCTATGTTCTGCAAAGAAGGGAGGCTCAGAGAAGCCAAGTTGATTGTTGATTTGATGAATAAATGGGTCAAGACCCCGATACTGTCACTTACACCACCCTTATTAATGGATATTGCAAGCAAGGTCTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_140908.p1 GENE.R_Transcript_140908~~R_Transcript_140908.p1 ORF type:complete len:341 (+),score=37.55,PPR_2|PF13041.2|8.3e-05,PPR_2|PF13041.2|1.5e-08,PPR_2|PF13041.2|1.8e-12,PPR_2|PF13041.2|5.6e-16,PPR_2|PF13041.2|4.9e-12,PPR_2|PF13041.2|1.1e-15,PPR_2|PF13041.2|0.00043,PPR_1|PF12854.3|0.0026,PPR_1|PF12854.3|1.2e-05,PPR_1|PF12854.3|5.1e-13,PPR_1|PF12854.3|1.6e-06,PPR_1|PF12854.3|1.2e-08,PPR_1|PF12854.3|2.8e-08,PPR|PF01535.16|36,PPR|PF01535.16|0.0026,PPR|PF01535.16|0.0018,PPR|PF01535.16|2.4e-10,PPR|PF01535.16|0.00018,PPR|PF01535.16|8.9e-05,PPR|PF01535.16|0.00084,PPR_3|PF13812.2|39,PPR_3|PF13812.2|0.051,PPR_3|PF13812.2|50,PPR_3|PF13812.2|1.7e-05,PPR_3|PF13812.2|0.11,PPR_3|PF13812.2|0.00011,PPR_3|PF13812.2|6.3 R_Transcript_140908:62-1084(+)
MMNMVVHVLRNGNISRLCFASSFNTNIIATSFPFHCRCFGNLRHVNKTLVPENQNGFMFNNVNDAVSHLNHLLQVRPNPPMAAIHSVLSCIVKMGHYSTVLTLFKMMGFLQFSPDLYSLNIVINCYCHLGRVELGFSVMGNIIKLGFEPKIVTFTPLIRGLCANNKYVDAVEIFHKVGDQGLPLDLFTYNTLINGLCKLGLFVEAFDVLEEMECHGCMPDAVTFSSIIDSLIKRKLLSEAINLFSLMISKRITPNVVTYNCFLWGLCNAGQWDSANRLLQEMFDAKIAPDNCTFNILVAMFCKEGRLREAKLIVDLMNKWVKTPILSLTPPLLMDIASKV*

Click here to download the sequence:
Link to NCBI Protein BLAST