Transcript Information: R_Transcript_140908.p2


Annotated TAIR IDAT3G22470.1
Annotated Gene NamePentatricopeptide repeat (PPR) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr3:7966066-7967925 | Reverse length=619
E-Value4E-57
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.69959083798574
Replicate 20.21947352351531
Replicate 30
Condition 2: 8 Hour
Replicate 10.17063320520728
Replicate 20.31164992113151
Replicate 30
Condition 3: 24 Hour
Replicate 10.23997707903523
Replicate 20.30739036781292
Replicate 30.15252755879371


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_140908.p2 GENE.R_Transcript_140908~~R_Transcript_140908.p2 ORF type:complete len:287 (+),score=53.84,PPR_2|PF13041.2|7.2e-17,PPR_2|PF13041.2|8.7e-17,PPR_2|PF13041.2|2.6e-12,PPR_2|PF13041.2|2.3e-14,PPR_2|PF13041.2|2.6e-12,PPR_2|PF13041.2|0.0027,PPR_1|PF12854.3|3.8e-13,PPR_1|PF12854.3|6.8e-09,PPR_1|PF12854.3|1.4e-14,PPR_1|PF12854.3|3.8e-09,PPR_1|PF12854.3|0.00053,PPR_1|PF12854.3|4.6e-05,PPR_1|PF12854.3|0.002,PPR|PF01535.16|2.6e-08,PPR|PF01535.16|1.4e-05,PPR|PF01535.16|2.6e-09,PPR|PF01535.16|3.3e-06,PPR|PF01535.16|0.14,PPR|PF01535.16|2.8e-05,PPR|PF01535.16|2.3e-05,PPR_3|PF13812.2|6.3e-05,PPR_3|PF13812.2|0.00054,PPR_3|PF13812.2|3.1e-05,PPR_3|PF13812.2|0.00015,PPR_3|PF13812.2|0.51,PPR_3|PF13812.2|0.6,PPR_3|PF13812.2|12 R_Transcript_140908:1018-1878(+)
ATGGGTCAAGACCCCGATACTGTCACTTACACCACCCTTATTAATGGATATTGCAAGCAAGGTCTAATAAACAAAGCATTGCAAGTTTTTGATGTTTTGGCTGCCAAGGGTTGTGCACCTGATGTTGTATCCTACACTTCATTGCTCAGTGGCCTTTTTGTTCAAAAAAGGACGGATGATGCAATGTGGCTCTTTAGGGAGATGTCACTCAAAGGATTGACTCCAAATGCGTTCACATACAGCACAGTCATAGATGGATTGTGCAAGGTTGGTAGAATTGAAGAAGCATGCAGTATTTTCGACGAGATGCAAATCAGGGGTGGAGTTGCTAACCTCATTACTTATGGTGCTCTACTAAGTGGCCTGTGCAAAAGCCATCATCTTGACAAGGCCTTCAAACTTTTTCACACTATGGAACATGAAGGATTAATTCCGAACATAAACATCTATGTGATCCTCATAGATGGATTTTGTGAGGCCAGCCAAGTTGACGTTGTTAGGAAGCTACTCTCTCTTCTTTTAGAGAAAAACATATGGGGTGATGCTCAGTGGTACAATGTCATCATCAATCGACTTTGCAAAGTAGGGATGCTGGCTGAAGCAAGTGACTTCATAAGGAAAATGGAGAGGTTTGGCTGCTTTCCTAATCATTCCAGTTACAATAGTATGATCAAGGGATATCTTTGCCAAAATGAGATATCTAAGGCTTTGGAATATATTCAGATGATGCATGATAATGGTTATTATATGTGTAAGCAGGTCATCAACTTAATTGCTGATATTTTGTCAAGCAAAACAGTTGATCCGCAACAGGAACAGATGCTGAAGAAGTTCGTCCTTATCAATGAAAATTTGCATTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_140908.p2 GENE.R_Transcript_140908~~R_Transcript_140908.p2 ORF type:complete len:287 (+),score=53.84,PPR_2|PF13041.2|7.2e-17,PPR_2|PF13041.2|8.7e-17,PPR_2|PF13041.2|2.6e-12,PPR_2|PF13041.2|2.3e-14,PPR_2|PF13041.2|2.6e-12,PPR_2|PF13041.2|0.0027,PPR_1|PF12854.3|3.8e-13,PPR_1|PF12854.3|6.8e-09,PPR_1|PF12854.3|1.4e-14,PPR_1|PF12854.3|3.8e-09,PPR_1|PF12854.3|0.00053,PPR_1|PF12854.3|4.6e-05,PPR_1|PF12854.3|0.002,PPR|PF01535.16|2.6e-08,PPR|PF01535.16|1.4e-05,PPR|PF01535.16|2.6e-09,PPR|PF01535.16|3.3e-06,PPR|PF01535.16|0.14,PPR|PF01535.16|2.8e-05,PPR|PF01535.16|2.3e-05,PPR_3|PF13812.2|6.3e-05,PPR_3|PF13812.2|0.00054,PPR_3|PF13812.2|3.1e-05,PPR_3|PF13812.2|0.00015,PPR_3|PF13812.2|0.51,PPR_3|PF13812.2|0.6,PPR_3|PF13812.2|12 R_Transcript_140908:1018-1878(+)
MGQDPDTVTYTTLINGYCKQGLINKALQVFDVLAAKGCAPDVVSYTSLLSGLFVQKRTDDAMWLFREMSLKGLTPNAFTYSTVIDGLCKVGRIEEACSIFDEMQIRGGVANLITYGALLSGLCKSHHLDKAFKLFHTMEHEGLIPNINIYVILIDGFCEASQVDVVRKLLSLLLEKNIWGDAQWYNVIINRLCKVGMLAEASDFIRKMERFGCFPNHSSYNSMIKGYLCQNEISKALEYIQMMHDNGYYMCKQVINLIADILSSKTVDPQQEQMLKKFVLINENLH*

Click here to download the sequence:
Link to NCBI Protein BLAST