Transcript Information: R_Transcript_140941.p1


Annotated TAIR IDAT3G45780.1
Annotated Gene Namephototropin 1
Annotated Gene Symbol(s)PHOT1, NPH1, JK224, RPT1
Annotation TypeOrtholog
Chromosome Positionchr3:16818557-16823960 | Forward length=996
E-Value3E-264
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.0886472734255
Replicate 20.76603417770905
Replicate 31.4815302922885
Condition 2: 8 Hour
Replicate 11.0963820125632
Replicate 20.70457173297268
Replicate 30.78265651099513
Condition 3: 24 Hour
Replicate 11.4467606544822
Replicate 20.65836593703216
Replicate 30.87115242534915


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_140941.p1 GENE.R_Transcript_140941~~R_Transcript_140941.p1 ORF type:3prime_partial len:603 (+),score=143.89,PAS_9|PF13426.2|1.6e-19,PAS_9|PF13426.2|7.6e-19,PAS_3|PF08447.7|4.7e-09,PAS_3|PF08447.7|2.2e-07,PAS|PF00989.20|7.1e-08,PAS|PF00989.20|2.6e-08,PAS_4|PF08448.6|0.0036,PAS_4|PF08448.6|0.0042 R_Transcript_140941:388-2193(+)
ATGGAATCAGAACGTACAGGCAAGTCATCCTCACTCATCCCACCATTGCCAAGAGATCCTCGAGGCTCTCTGGAAGTATTCAATCCTTCTACTTACTCTACGAGACCAACCAATCCAGTTTTCCAGTCCCCATCTACATGGAAAAGCTGGACCGAAGCACATGGCAGGCTCGAGCAGGTTCAGGAGGAGGAGCCAAAGCTTCCAAATAAACAGGATTGGGCTAATTCAGAGGAGATCACCTCATGGATGGCGCTACCCAACCCAGGCTCACCAGTGTCAACAACAATATCCCATGCAAAAGCGGATGATCACCAGAGTAATAAGAATGAGGCAGAGCATAGGGCAGCAGAATGGGGTCTAGTGCTGAAAACAGATACTGAAACTGGTAAGCCACAAGGTGTGACTGTGCGCACTTCGGGTGGGGATGATAAACCCGAGAACTCGAGGAGGGAGTCCGGTGGGTCAGTTCGGAACTCTGGTGAATCCTCAGATGATGGATTGGCGAGGGGTGTGCCAAGAGTGTCTGAAGACTTGAAGGATGTTTTATCAACATTTCAGCAAACTTTTGTGGTTTCCGATGCTTCCAAACCGGATTATCCAATTCTGTACGCTAGTGAGGGATTCTTTAAGATGACTGGGTACAGCTCCAGAGAGGTTATTGGCAGAAACTGCCGGTTTTTACAGGGAGCAGAAACCGACCCAGAAGAGTTGGAAAAGATCAGAGCAGCTTTACAAAAGGGAAATAATTACTGTGGGAGGTTGGTGAATTATAAGAAAGATGGGACCCCTTTCTGGAATCTTTTAACAATTGCACCCATCAAAGATGAATCAGGAAAGGTTCTCAAATTTATAGGGATGCAAGTGGAAGTGAGCAAGCACACAGAGGGTTTTAAAGATAAGATGATCCGTCCGAATGGGCTACCAGAATCCTTGATTCGTTATGATGCTCGTCAAAAGGACATGGCAACCTCTTCTGTAAATGAGCTAGTGCAGGCAGTTAAAAGGCCTCGGGCACTTAGTGAATCAGCTAATCGACCCTTCAGGAGAAAGTCAGGTGTTGCTAATGAGAAAGAAAGAACAGAGTCTCTCACGCAAAGAAAATCAGAAAGTGTTGCTTCAGCTAGGCGTAATTCATTAGAGCGACTCAGTGTGGTGCCTGAAAAGAAACCTAAAAAATCTAGACGCCGTTCATTGATGGGAATTTTAAAGAAAAACAAGCCCAGTGAGGCCACTGATGATGAAGTTATCATTGATATTGGAAGTACTGATGAAGAAATTGATTATTACGAAGATGATGAGGGAAGGCCTGATAGTGTGGATGACAAAGTGAGGAAGAAGGAAATGAGAAAGGGTATTGATCTTGCTACTACCCTTGAACGTATAGAGAAAAATTTTGTCATCACTGATCCAAGGCTTCCTGACAATCCCATTATATTTGCATCTGATAGCTTTTTGGAATTGACGGAGTACAGTAGGGAAGAGATTTTGGGAAGAAATTGCAGGTTTCTTCAGGGACCTGAAACTGATCCAGAGACAGTGCGCAAAATCAGAGAGGCAATCAATAATGAAACAGAAGTCACTGTTCAGTTGATTAACTACACAAAGACTGGAAAAAAATTCTGGAATGTGTTTCATCTCCAGCCTATGCGTGATCAAAAGGGAGAAGTTCAGTACTTTATTGGGGTACAGTTAGATGGTAGTCAACATGTTGAAGCACTGCAAAACAGCATTTCATTTGCTTCTGCTACAGAGAGTGAGGAACAGGTGAAGCAAACGGCAAAAAATGTTGATGTTGCAGTTAGAGAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_140941.p1 GENE.R_Transcript_140941~~R_Transcript_140941.p1 ORF type:3prime_partial len:603 (+),score=143.89,PAS_9|PF13426.2|1.6e-19,PAS_9|PF13426.2|7.6e-19,PAS_3|PF08447.7|4.7e-09,PAS_3|PF08447.7|2.2e-07,PAS|PF00989.20|7.1e-08,PAS|PF00989.20|2.6e-08,PAS_4|PF08448.6|0.0036,PAS_4|PF08448.6|0.0042 R_Transcript_140941:388-2193(+)
MESERTGKSSSLIPPLPRDPRGSLEVFNPSTYSTRPTNPVFQSPSTWKSWTEAHGRLEQVQEEEPKLPNKQDWANSEEITSWMALPNPGSPVSTTISHAKADDHQSNKNEAEHRAAEWGLVLKTDTETGKPQGVTVRTSGGDDKPENSRRESGGSVRNSGESSDDGLARGVPRVSEDLKDVLSTFQQTFVVSDASKPDYPILYASEGFFKMTGYSSREVIGRNCRFLQGAETDPEELEKIRAALQKGNNYCGRLVNYKKDGTPFWNLLTIAPIKDESGKVLKFIGMQVEVSKHTEGFKDKMIRPNGLPESLIRYDARQKDMATSSVNELVQAVKRPRALSESANRPFRRKSGVANEKERTESLTQRKSESVASARRNSLERLSVVPEKKPKKSRRRSLMGILKKNKPSEATDDEVIIDIGSTDEEIDYYEDDEGRPDSVDDKVRKKEMRKGIDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDPETVRKIREAINNETEVTVQLINYTKTGKKFWNVFHLQPMRDQKGEVQYFIGVQLDGSQHVEALQNSISFASATESEEQVKQTAKNVDVAVRE

Click here to download the sequence:
Link to NCBI Protein BLAST