Transcript Information: R_Transcript_141894.p1


Annotated TAIR IDAT2G15790.1
Annotated Gene Namepeptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase
Annotated Gene Symbol(s)SQN, CYP40
Annotation TypeOrtholog
Chromosome Positionchr2:6878144-6880743 | Reverse length=361
E-Value1.5E-218
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 123.194370273952
Replicate 217.516250623541
Replicate 319.489710440925
Condition 2: 8 Hour
Replicate 119.345186118542
Replicate 220.507770086391
Replicate 326.174421944315
Condition 3: 24 Hour
Replicate 128.031355786313
Replicate 227.599536677988
Replicate 332.529240667267


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_141894.p1 GENE.R_Transcript_141894~~R_Transcript_141894.p1 ORF type:complete len:362 (+),score=93.34,Pro_isomerase|PF00160.17|1.3e-50,TPR_11|PF13414.2|7.1e-08,TPR_11|PF13414.2|5.8e-07,TPR_1|PF00515.24|0.0016,TPR_1|PF00515.24|1.4e+02,TPR_1|PF00515.24|1.3e-08,TPR_2|PF07719.13|0.003,TPR_2|PF07719.13|3.3e+03,TPR_2|PF07719.13|5.5e-08,TPR_8|PF13181.2|12,TPR_8|PF13181.2|1.7e-08,TPR_7|PF13176.2|0.99,TPR_7|PF13176.2|0.002,TPR_14|PF13428.2|2.3e+03,TPR_14|PF13428.2|1.3e-05,TPR_16|PF13432.2|4e+02,TPR_16|PF13432.2|0.00014 R_Transcript_141894:313-1398(+)
ATGGCAAGACCCAGATGCTATCTTGACGTAAGCATTGGAGGAGAGCTTGAAGGAAGGATTGTAGTTGAGCTCTATAACGACGTCGTTCCTAAAACTGCTGAAAATTTCCGAGCTTTATGTACTGGTGAGAAGGGTGTTGGCCCTAATACTGGGGTCCCTCTTCACTACAAGGGATGTGGTTTTCATCGCGTTATCAAGAGCTTTATGATCCAAGGAGGGGACATTTCGGCTGGCGATGGTACTGGAGGCGAATCAGTATATGGGTTGAAGTTCGAGGATGAGAACTTTGAGTTGAAACATGAAAGGAAGGGAATGTTATCGATGGCTAATAGCGGGCCTAATACCAATGGATCGCAGTTTTTCATCACTACTACTAGGACTTCTCATCTAGATGGGAAGCATGTTGTTTTTGGTCGGGTGATCAAAGGCATGGGAGTTGTTCGTTCTATCGAGCATGTCAATGCCGATAGCAATGATCGGCCCACCCAGGAAGCAATCATTGCTGATTGTGGTGAAATTCCTGAGGGGGCTGATGATGGCATTGCAAATTTCTTCAAGGATGGTGACAACTATGCTGATTGGCCAGCTGATCTTGATGAGAGTCCAAATGAACTCTCTTGGTGGACGGATGCTGTTGATTCAATTAAGGTGCTTGGAAACGAGCATTTCAAGAAACAAGACTATAAAATGGCTCTGAAGAAGTACAGGAAAGCATTGCGCTACTTGGATATTTCCTGGGAGAAAGATGGGATTGATGAAGAGAAAAGTGCATCGTTGAGGAAGATCAAGTCACAGATTTTCACAAACAGTTCTGCCTGTAAACTGAAGCTGGGGGACTTAAAAGGCGCTTTGTTGGATTGTGAATTTGCAATGCGTGACAGTGATAATAATGTCAAAGCTTTGTTCCGCCAGGGACAGGCTCATATGGCTCTCAATGACATAGATGCCGCAGTTGAAAGTTTCAAGAAAGCGTTAGAACTGGAACCTAATGATGCTGGAATAAAAAGGGAGCTTGCAATTGCGAAGAAGAAGAATGCTGATAGACGTGATCAGGAGAGAAAAGCTTACTCTAAGATGTTCCAATAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_141894.p1 GENE.R_Transcript_141894~~R_Transcript_141894.p1 ORF type:complete len:362 (+),score=93.34,Pro_isomerase|PF00160.17|1.3e-50,TPR_11|PF13414.2|7.1e-08,TPR_11|PF13414.2|5.8e-07,TPR_1|PF00515.24|0.0016,TPR_1|PF00515.24|1.4e+02,TPR_1|PF00515.24|1.3e-08,TPR_2|PF07719.13|0.003,TPR_2|PF07719.13|3.3e+03,TPR_2|PF07719.13|5.5e-08,TPR_8|PF13181.2|12,TPR_8|PF13181.2|1.7e-08,TPR_7|PF13176.2|0.99,TPR_7|PF13176.2|0.002,TPR_14|PF13428.2|2.3e+03,TPR_14|PF13428.2|1.3e-05,TPR_16|PF13432.2|4e+02,TPR_16|PF13432.2|0.00014 R_Transcript_141894:313-1398(+)
MARPRCYLDVSIGGELEGRIVVELYNDVVPKTAENFRALCTGEKGVGPNTGVPLHYKGCGFHRVIKSFMIQGGDISAGDGTGGESVYGLKFEDENFELKHERKGMLSMANSGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVNADSNDRPTQEAIIADCGEIPEGADDGIANFFKDGDNYADWPADLDESPNELSWWTDAVDSIKVLGNEHFKKQDYKMALKKYRKALRYLDISWEKDGIDEEKSASLRKIKSQIFTNSSACKLKLGDLKGALLDCEFAMRDSDNNVKALFRQGQAHMALNDIDAAVESFKKALELEPNDAGIKRELAIAKKKNADRRDQERKAYSKMFQ*

Click here to download the sequence:
Link to NCBI Protein BLAST