Transcript Information: R_Transcript_142617.p1


Annotated TAIR IDAT5G48050.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34070.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:19472661-19473770 | Reverse length=369
E-Value1E-13
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.62744553281846
Replicate 20.45929407160652
Replicate 31.0021697698317
Condition 2: 8 Hour
Replicate 15.3562829572099
Replicate 213.067140325943
Replicate 326.943797014637
Condition 3: 24 Hour
Replicate 12.4392670179436
Replicate 21.5852217327602
Replicate 33.4883529344743


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_142617.p1 GENE.R_Transcript_142617~~R_Transcript_142617.p1 ORF type:3prime_partial len:320 (+),score=49.87,UBN2_3|PF14244.2|3.5e-16,UBN2|PF14223.2|6.4e-13,Retrotrans_gag|PF03732.13|3e-08,DUF4219|PF13961.2|8.8e-07,DUF4219|PF13961.2|6.8e+03,DUF4219|PF13961.2|1.8e+03,UBN2_2|PF14227.2|3.2e-06,zf-CCHC|PF00098.19|1.1e-05 R_Transcript_142617:821-1777(+)
ATGGCAGATATTGCTAGTTCATCTAGTAGTATTGAGAAGCTTAACAACGGGAACTATAATACGTGGAGCACACGTATAAAGTTCTATTTGCTCGGACAAGACCTCTGGGGTATTGTCGGTGGTAGTGAAACCACAAAACCAATCGACCCAGAAGAATTAAAGATATGGAAGATTAAAGCCGGGAAGGCTATGTATGTGTTTTCCGCAACTGTTGAAGACGAGTTGCTACCCCGCATCAAGGATGCAAAGACACCAAAAGAGGCTTGGGACACCTTACAGCAGTTGTTCGCAAAGAGGAACGACGCTCAACTTCAACTACTCGAAAATGAGTTGTTGACGATCAGGCAGAACAAAATGACGGTGAATCAGTATTTCACCAAAGTTAAATCTTTGTGTGAAACAATCTCGAAATTGGATCCACAAAATCCAATTACAGAGACAAGGATGCGCAGGATCATCGTTCATGGCTTAAGATCAGAGTTTAACAGTCTTGTCACTGCAACTCGAGGTTGGGCTACAGAACCAACTCTAACAGATTTGGAAAATGTACTTGCCAACCAAGAGGCTCTAGATAAACAAATGTCTGGAGTTTCCATAAGAGATGAAGAAGACAAAGCTCTCTTTGGAAATAAGAGAGTCAAAGAAGGTGATGAGAAATCTGCTAGATCGAGAAATGGAGCCGGCAAGTCATGGAGAAAGCCAGGCTGGTCCAATAAGGGACAACAAAGGAGAGGCTTCCAGCGAGGGGGAGCCAGGTCAAGTCGAGGCTGTGATGTGAATGGTTATAAGAACCAAGCACTACAAGATGTTGTGTGCTACAAATGCAAGAAAAAGGGGCACTATGCTCGAGATTGTTGGTCCAAATCAGTAGAAGGGAATACTGCGACATCGGCAACAAAGGAGAGCCAAAGTGAAACCGAGTGGGACCTACAAGCGTCCTTTGCAATGGAAGAAGAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_142617.p1 GENE.R_Transcript_142617~~R_Transcript_142617.p1 ORF type:3prime_partial len:320 (+),score=49.87,UBN2_3|PF14244.2|3.5e-16,UBN2|PF14223.2|6.4e-13,Retrotrans_gag|PF03732.13|3e-08,DUF4219|PF13961.2|8.8e-07,DUF4219|PF13961.2|6.8e+03,DUF4219|PF13961.2|1.8e+03,UBN2_2|PF14227.2|3.2e-06,zf-CCHC|PF00098.19|1.1e-05 R_Transcript_142617:821-1777(+)
MADIASSSSSIEKLNNGNYNTWSTRIKFYLLGQDLWGIVGGSETTKPIDPEELKIWKIKAGKAMYVFSATVEDELLPRIKDAKTPKEAWDTLQQLFAKRNDAQLQLLENELLTIRQNKMTVNQYFTKVKSLCETISKLDPQNPITETRMRRIIVHGLRSEFNSLVTATRGWATEPTLTDLENVLANQEALDKQMSGVSIRDEEDKALFGNKRVKEGDEKSARSRNGAGKSWRKPGWSNKGQQRRGFQRGGARSSRGCDVNGYKNQALQDVVCYKCKKKGHYARDCWSKSVEGNTATSATKESQSETEWDLQASFAMEEE

Click here to download the sequence:
Link to NCBI Protein BLAST