Transcript Information: R_Transcript_143228.p1


Annotated TAIR IDAT1G19720.1
Annotated Gene NamePentatricopeptide repeat (PPR-like) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:6819926-6822610 | Reverse length=894
E-Value1E-102
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.9823245570124
Replicate 20.47300801939095
Replicate 30.91741627418883
Condition 2: 8 Hour
Replicate 10.98066042341908
Replicate 20.92354080195134
Replicate 31.4993821038117
Condition 3: 24 Hour
Replicate 11.0343943181444
Replicate 20.93852165491818
Replicate 31.0957549280049


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_143228.p1 GENE.R_Transcript_143228~~R_Transcript_143228.p1 ORF type:complete len:799 (+),score=148.99,PPR_2|PF13041.2|2e+02,PPR_2|PF13041.2|0.022,PPR_2|PF13041.2|3.8,PPR_2|PF13041.2|1.5e-09,PPR_2|PF13041.2|6e-07,PPR_2|PF13041.2|6.9e-07,PPR_2|PF13041.2|0.75,PPR_2|PF13041.2|8.9e-07,PPR_2|PF13041.2|1e-10,PPR_2|PF13041.2|4.5e-08,PPR_2|PF13041.2|1.9e+02,PPR_2|PF13041.2|2.6e-13,PPR_2|PF13041.2|23,PPR_2|PF13041.2|3.6e-08,PPR_2|PF13041.2|0.058,PPR|PF01535.16|2.5e+03,PPR|PF01535.16|0.44,PPR|PF01535.16|0.28,PPR|PF01535.16|1.9e-05,PPR|PF01535.16|7.8e-07,PPR|PF01535.16|0.0083,PPR|PF01535.16|0.0045,PPR|PF01535.16|0.61,PPR|PF01535.16|0.0035,PPR|PF01535.16|2.2e-05,PPR|PF01535.16|9.9,PPR|PF01535.16|3.8e-06,PPR|PF01535.16|7.8e+03,PPR|PF01535.16|0.15,PPR|PF01535.16|6.2e-06,PPR|PF01535.16|0.025,PPR_1|PF12854.3|1.4e+03,PPR_1|PF12854.3|5.7e+02,PPR_1|PF12854.3|5.3e+02,PPR_1|PF12854.3|0.00097,PPR_1|PF12854.3|2.4e-06,PPR_1|PF12854.3|1.4,PPR_1|PF12854.3|1.9e+02,PPR_1|PF12854.3|0.53,PPR_1|PF12854.3|0.00046,PPR_1|PF12854.3|8.5e-08,PPR_1|PF12854.3|89,PPR_1|PF12854.3|0.058,PPR_1|PF12854.3|2,PPR_1|PF12854.3|0.03,PPR_1|PF12854.3|82,PPR_3|PF13812.2|8e+03,PPR_3|PF13812.2|1e+03,PPR_3|PF13812.2|36,PPR_3|PF13812.2|0.00094,PPR_3|PF13812.2|5e-05,PPR_3|PF13812.2|7.8e+03,PPR_3|PF13812.2|35,PPR_3|PF13812.2|5.7,PPR_3|PF13812.2|0.047,PPR_3|PF13812.2|6.5,PPR_3|PF13812.2|2.7e+02,PPR_3|PF13812.2|0.0019,PPR_3|PF13812.2|2.1,PPR_3|PF13812.2|0.062,PPR_3|PF13812.2|4.7,TPR_14|PF13428.2|9.8,TPR_14|PF13428.2|32,TPR_14|PF13428.2|2.3e+03,TPR_14|PF13428.2|3.3e+02,TPR_14|PF13428.2|2e+03,TPR_14|PF13428.2|2.7,TPR_14|PF13428.2|2.4e+03,TPR_14|PF13428.2|1.5e+03 R_Transcript_143228:312-2708(+)
ATGTCCACCGCTGGATTGCTTCCCTCCTCTCCAAGTCCACTTCACAACCCACCTTTACTCAATCCTATCCTTAGCAAGCTCACTTTAGCACCTTCACCCTTCAAACCTGAAGCTAGAACATCTCAAATTTTGGCTCTTAAAGACTTACCCAACTCAAATTACAGACACCCAGATAACCATTTATGCTCAAACCCTCAAAACACAAATGGTGTAGTTAATTCCTCTCAGCAGCTTGGTGAAGATGAGATTGGTGACTGTGTCTATCTTCTGGACCAAATCAACATCAATGGTAGTGCTAACCATTCTTTCACTTGCAGACAAGTTCATGGATATCTCGTGAAAATGGGTGCTCTAAAGGCTAATGCTTTCCTTGCAAATAAACTGGTGGTGTCCTATGCAAGGAATACCGAGTTTTCGAACGATGCCCAGAAGCTGTTCGATGAAATTCCTAAGAGAACAGTACCCGCTTATGCTGCTGTAATAGGCTCACTTTGTCGTTTGGAGAAGTGGGTTGATCTTATTTCCGTGTTCCGGATGATGGTGAATGATGGAATGTTACCTGACAGATATCTTGTCCCAACTATTCTGAAAGCGGCTTCTGTGATGAGATTGAGGGAAATGGGTAAAATGTTTCATGGGTATGTTATAAGAAGGGGGATTCAAGAGGATGTCTTTGTCGGGAATGCTTTTATTGACATGTATGCAAATTGTGGGGATTTGAGATTGTCAAAGAGTGTTTTTGATACAATGGATGAAAGAGATGTGGTGTCTTGGACTGCCCTTGTGGTTGCTTACATGACTCATGGTCGTCTCGAGGAAGCTGTTGATACATTTCACAGGATGGAGGTGGATGGTGTGGTACCTGATTTGATTTCTTGGAGTGCGCTTGTCTCGGGCTTTGCTCAGAATGGTGACATTGAAATGGCTTTACAATCTCTGGAGGAGATGCAGGAAAAAGGAGTGAAGCCAAAGGTTAATTCCTGGAATGGAATAATCTCAGGCTGTGTTCAGAATGAATATTATGAAGATGCTGTAGATGCATTTGTTAAGATGTTCTGGACTTCTTTAGTGCCAAATGTTGTGACATTTGTTAGTGTCCTACCAGCTTGTGCTGCCTTGAAGGATCTAAATTTAGGAAAAATGATTCATGGGCATTCTATCAAACTTGGTTTTTCAGTTGATACTCACATGGAGGGGTCTTTGATTAATATGTATTGGAAATGCGGAAGGATTGACTGTGCAGAAAGCGTATTTGCAAGAATGAGGAACAAAAGCACCGCTGTCTGGAATGAGATGATTGCAGCTTATGTCAATGGAGAGAGTATAGGATCTGCTCTGAGACTATATAATTCCATGAAAGATACTGGTCCAAAGCCTGACGAGATTACCTGTAACACAATCCTTGCTGCCTACGCCAGGAATGGGGAGAAAAACAAGGTATGCGAACTACTGTATGAAATGTTTGAAATGGATTTGCAGCCAAATCTTGTAACTTTCAATATTTTGATATCTGGATACCAGCAATCTGGCCTTAGCCATGAAGCACTGAGATTGTTCCAAGCTATGCAAGTACCAAATAGTGGTAGCTTTCTATTTGGATTCATGAAAATGGCAGTTCGACCAAACCCTGTCACTGTAACTGGTGCTCTTGCTGCTTGTGCTGACTTGTGCTCATGGCGCCATGGGAAGGAATTACATGGTTATGTGGTGAGAAATTGCCTTGAGTCAAATGTTTTTGTTTCAAGTGCACTGGTTGATATGTATGCAAAATGCTCTGATATAGATTCAGCAGCAGAGGTCTTCTGGAGAACGGAGAATAGGAACACAGTTCTGTGGAATGCACTAATGGCCAGTTATATCAGAGATAGGCAACTAAACAAAGCATTTGATCTCTTCAACAGAATGCTGAAAGAAGGACTTAATCCCAGCTCTGTTACCGTTATGATACTCCTGTCTGCCTGTGGAGACATTGGAGCACTTAGATTGGGGAGAGAATTTCATGGTTGCCTTCTGAAGTGTCAACCTGACAAGCCTTTCGATTACTTTGCAAGTGCTTTAATAGACATGTACGCTAAATGTGGTAGCATAGCGAAAGCGAAACAAGTTTTTGACTCTGTGACCTCTAAAGATGTTGCAGTATGGAATTCCATGATCTCATCTTTGTCTGCTCATGGGATGACTAAGGATGCAATTACCCTCTTTGGACGAATGGAGACGTCAGGAAGCATACCAGATGGAAGAACCTTTATTGCACTTCTTTCGGCTTGTGTACGTGATGGTTTGGTACAGGAAGGGTGGAAGTATTTCAATTTAATGGAACATATGTATGGAGTTAACCCAAAGTTTGGAACACTACACTTGTATGGTAGGAATCATGGGAACTGCTGGTTTGCTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_143228.p1 GENE.R_Transcript_143228~~R_Transcript_143228.p1 ORF type:complete len:799 (+),score=148.99,PPR_2|PF13041.2|2e+02,PPR_2|PF13041.2|0.022,PPR_2|PF13041.2|3.8,PPR_2|PF13041.2|1.5e-09,PPR_2|PF13041.2|6e-07,PPR_2|PF13041.2|6.9e-07,PPR_2|PF13041.2|0.75,PPR_2|PF13041.2|8.9e-07,PPR_2|PF13041.2|1e-10,PPR_2|PF13041.2|4.5e-08,PPR_2|PF13041.2|1.9e+02,PPR_2|PF13041.2|2.6e-13,PPR_2|PF13041.2|23,PPR_2|PF13041.2|3.6e-08,PPR_2|PF13041.2|0.058,PPR|PF01535.16|2.5e+03,PPR|PF01535.16|0.44,PPR|PF01535.16|0.28,PPR|PF01535.16|1.9e-05,PPR|PF01535.16|7.8e-07,PPR|PF01535.16|0.0083,PPR|PF01535.16|0.0045,PPR|PF01535.16|0.61,PPR|PF01535.16|0.0035,PPR|PF01535.16|2.2e-05,PPR|PF01535.16|9.9,PPR|PF01535.16|3.8e-06,PPR|PF01535.16|7.8e+03,PPR|PF01535.16|0.15,PPR|PF01535.16|6.2e-06,PPR|PF01535.16|0.025,PPR_1|PF12854.3|1.4e+03,PPR_1|PF12854.3|5.7e+02,PPR_1|PF12854.3|5.3e+02,PPR_1|PF12854.3|0.00097,PPR_1|PF12854.3|2.4e-06,PPR_1|PF12854.3|1.4,PPR_1|PF12854.3|1.9e+02,PPR_1|PF12854.3|0.53,PPR_1|PF12854.3|0.00046,PPR_1|PF12854.3|8.5e-08,PPR_1|PF12854.3|89,PPR_1|PF12854.3|0.058,PPR_1|PF12854.3|2,PPR_1|PF12854.3|0.03,PPR_1|PF12854.3|82,PPR_3|PF13812.2|8e+03,PPR_3|PF13812.2|1e+03,PPR_3|PF13812.2|36,PPR_3|PF13812.2|0.00094,PPR_3|PF13812.2|5e-05,PPR_3|PF13812.2|7.8e+03,PPR_3|PF13812.2|35,PPR_3|PF13812.2|5.7,PPR_3|PF13812.2|0.047,PPR_3|PF13812.2|6.5,PPR_3|PF13812.2|2.7e+02,PPR_3|PF13812.2|0.0019,PPR_3|PF13812.2|2.1,PPR_3|PF13812.2|0.062,PPR_3|PF13812.2|4.7,TPR_14|PF13428.2|9.8,TPR_14|PF13428.2|32,TPR_14|PF13428.2|2.3e+03,TPR_14|PF13428.2|3.3e+02,TPR_14|PF13428.2|2e+03,TPR_14|PF13428.2|2.7,TPR_14|PF13428.2|2.4e+03,TPR_14|PF13428.2|1.5e+03 R_Transcript_143228:312-2708(+)
MSTAGLLPSSPSPLHNPPLLNPILSKLTLAPSPFKPEARTSQILALKDLPNSNYRHPDNHLCSNPQNTNGVVNSSQQLGEDEIGDCVYLLDQININGSANHSFTCRQVHGYLVKMGALKANAFLANKLVVSYARNTEFSNDAQKLFDEIPKRTVPAYAAVIGSLCRLEKWVDLISVFRMMVNDGMLPDRYLVPTILKAASVMRLREMGKMFHGYVIRRGIQEDVFVGNAFIDMYANCGDLRLSKSVFDTMDERDVVSWTALVVAYMTHGRLEEAVDTFHRMEVDGVVPDLISWSALVSGFAQNGDIEMALQSLEEMQEKGVKPKVNSWNGIISGCVQNEYYEDAVDAFVKMFWTSLVPNVVTFVSVLPACAALKDLNLGKMIHGHSIKLGFSVDTHMEGSLINMYWKCGRIDCAESVFARMRNKSTAVWNEMIAAYVNGESIGSALRLYNSMKDTGPKPDEITCNTILAAYARNGEKNKVCELLYEMFEMDLQPNLVTFNILISGYQQSGLSHEALRLFQAMQVPNSGSFLFGFMKMAVRPNPVTVTGALAACADLCSWRHGKELHGYVVRNCLESNVFVSSALVDMYAKCSDIDSAAEVFWRTENRNTVLWNALMASYIRDRQLNKAFDLFNRMLKEGLNPSSVTVMILLSACGDIGALRLGREFHGCLLKCQPDKPFDYFASALIDMYAKCGSIAKAKQVFDSVTSKDVAVWNSMISSLSAHGMTKDAITLFGRMETSGSIPDGRTFIALLSACVRDGLVQEGWKYFNLMEHMYGVNPKFGTLHLYGRNHGNCWFA*

Click here to download the sequence:
Link to NCBI Protein BLAST