Transcript Information: R_Transcript_144304.p1


Annotated TAIR IDAT1G05750.1
Annotated Gene NameTetratricopeptide repeat (TPR)-like superfamily protein
Annotated Gene Symbol(s)PDE247, CLB19
Annotation TypeOrtholog
Chromosome Positionchr1:1721523-1723025 | Forward length=500
E-Value1.4E-197
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.0202306299397
Replicate 20.97846836891486
Replicate 31.1119775532113
Condition 2: 8 Hour
Replicate 11.4739064337177
Replicate 21.4762523933987
Replicate 32.7139301315918
Condition 3: 24 Hour
Replicate 12.3180698560012
Replicate 22.0984615255112
Replicate 31.8275170903623


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_144304.p1 GENE.R_Transcript_144304~~R_Transcript_144304.p1 ORF type:complete len:515 (+),score=73.93,PPR_2|PF13041.2|8.2e-08,PPR_2|PF13041.2|1.5e+02,PPR_2|PF13041.2|1.2e-06,PPR_2|PF13041.2|1e-08,PPR_2|PF13041.2|6.9e-05,PPR_2|PF13041.2|5.9e-09,PPR_2|PF13041.2|1.2,PPR_2|PF13041.2|0.74,PPR_2|PF13041.2|3.3e+03,PPR_2|PF13041.2|81,PPR|PF01535.16|0.53,PPR|PF01535.16|2.9e+03,PPR|PF01535.16|1.5e+04,PPR|PF01535.16|1.1,PPR|PF01535.16|3.6e-06,PPR|PF01535.16|1.1e-06,PPR|PF01535.16|9.5e-06,PPR|PF01535.16|9.5e-07,PPR|PF01535.16|0.03,PPR|PF01535.16|0.0021,PPR|PF01535.16|1.9e+02,PPR|PF01535.16|0.75,PPR_1|PF12854.3|5.4,PPR_1|PF12854.3|5.1,PPR_1|PF12854.3|2.2e+03,PPR_1|PF12854.3|1.5e-07,PPR_1|PF12854.3|0.01,PPR_1|PF12854.3|2.3e+03,PPR_1|PF12854.3|3.3e-05,PPR_1|PF12854.3|0.008,PPR_1|PF12854.3|1.3,PPR_1|PF12854.3|0.08,PPR_3|PF13812.2|4.3,PPR_3|PF13812.2|1.3e+03,PPR_3|PF13812.2|4.6,PPR_3|PF13812.2|0.0065,PPR_3|PF13812.2|1.6e+04,PPR_3|PF13812.2|0.045,PPR_3|PF13812.2|0.0021,PPR_3|PF13812.2|0.11,PPR_3|PF13812.2|0.078,PPR_3|PF13812.2|14,PPR_3|PF13812.2|6.3,TPR_19|PF14559.2|2.8e+03,TPR_19|PF14559.2|1.6e+02,TPR_19|PF14559.2|86,TPR_19|PF14559.2|1.9e+03,TPR_19|PF14559.2|3.1,TPR_19|PF14559.2|62 R_Transcript_144304:120-1664(+)
ATGAACCTTCCCGCCAGACAATCAACTACCCAACTCCAACAACCTGTTATTCCTTCAAATCCAACCCAACCCACCTTCTCTAAATCAATTCACAACAACTTTAATCCCACCAAATCTCAAAATGTCTCTCTTAGACATTTTCACAAACATGTTGACCCCATTGTCTCTTGGACCAACGCCATCGCTCGTCACTGCCAAAATGGCAACCTCTCTGAAGCTGCCACCGAATTCGCCCGAATGAGACTTTCGGGTGTCGACCCGAATCACATTACTTTCATAACTCTTCTCTCTGGCTGTGCCCATTTCCCATCAAAAGGCCGGTCATTTGGGCCTATAATTCATGCCTATGTCAGAAAATTGGGGTTGGATAAGCATAATGTTAAGGTGGGCACAGCTTTAGTTGATATGTACTCAAAGTGTAGCCTTGTAGAGCATGCAAGAGTGACTTTTGATGAGATTTTGGATAAAAATTCGGTGTCTTGGAACACTATGATTAATGGGTACATGAGGAATCACAAGGTGGCTTATGCGGTCAAGCTGTTCGTTGAAATGCCTGTGAGAGATGCAATTTCGTGGACTGCGTTGATTAATGGGTTTGTGAAGAAGGGTCTTGATGAGAAAGCTTTGAAATATTTTGTTGAGATGCAACTTGCAGGGGTTCCGCCGGATTATGTAACGATTATTGCGGTACTATCTGCTTGTGCTAATCTTGGTGCCCTTAATTTAGGGCTGTGGATTAATAGGTTTGTTATGGGAAAGGAGTTTAAGGATAATATCCGTGTGTGTAACACGTTGATAGATATGTATTCGCGATGTGGTCATGTGGATTTTGCTCGTGAAATATTTGAACGGATGCCAAAGCGTAGTTTGGTGTCGTGGAACTCTATGATTGGTGGGTTTGCAGCCAATGGTCATGCGGAGGCGGCATTGAGGTTGTTTGATATGATACAGAGGGAAGGGTTTGCACCGGATGGAGTAAGTTTCACAGGAGCTCTTACTGCTTGCAGCCATGCCGGTTTAGTGGATCAAGGCCTCCAGTATTTTGATGAAATGCAGAGAGTTCATAAGCTGCCTCCACGGATTGAGCACTATGGATGCTTAGTTGATTTATATAGTCGTGCAGGGAGGTTAGAGGATGCGTTGAATGTGATAAAAAGCATGCCAATGAAGCCTAATGATGTTGTTCTAGGGTCATTGTTGGCCGCTTGTAGAAATTGTGGCGATGTTGGCTTGGCAGAGACGTTGATGAAATATCTATTGGAGTTGGATCCTGGCTGTGATTCTAATTACGTGCTGCTTGCAAATATGTATGCAGTAGCTGGAAGTTGGGAGGGTGCAGGCAAGGTTAGAAGGAAAATGAAGACTCACGGGATACAGAAGAGACCGGGAATCAGTTCAATTGAAATCGGAGATATTATTCATGAGTTTGTGGCCGGTGATAGATCCCATCCAGAGACAGGTCCTATTTATGGTGTTCTAGAGCTTCTGTCTTATGAGCTGGGGATATGTGGGTATGTTCCTGAAGCTACTGTGATGGAAACATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_144304.p1 GENE.R_Transcript_144304~~R_Transcript_144304.p1 ORF type:complete len:515 (+),score=73.93,PPR_2|PF13041.2|8.2e-08,PPR_2|PF13041.2|1.5e+02,PPR_2|PF13041.2|1.2e-06,PPR_2|PF13041.2|1e-08,PPR_2|PF13041.2|6.9e-05,PPR_2|PF13041.2|5.9e-09,PPR_2|PF13041.2|1.2,PPR_2|PF13041.2|0.74,PPR_2|PF13041.2|3.3e+03,PPR_2|PF13041.2|81,PPR|PF01535.16|0.53,PPR|PF01535.16|2.9e+03,PPR|PF01535.16|1.5e+04,PPR|PF01535.16|1.1,PPR|PF01535.16|3.6e-06,PPR|PF01535.16|1.1e-06,PPR|PF01535.16|9.5e-06,PPR|PF01535.16|9.5e-07,PPR|PF01535.16|0.03,PPR|PF01535.16|0.0021,PPR|PF01535.16|1.9e+02,PPR|PF01535.16|0.75,PPR_1|PF12854.3|5.4,PPR_1|PF12854.3|5.1,PPR_1|PF12854.3|2.2e+03,PPR_1|PF12854.3|1.5e-07,PPR_1|PF12854.3|0.01,PPR_1|PF12854.3|2.3e+03,PPR_1|PF12854.3|3.3e-05,PPR_1|PF12854.3|0.008,PPR_1|PF12854.3|1.3,PPR_1|PF12854.3|0.08,PPR_3|PF13812.2|4.3,PPR_3|PF13812.2|1.3e+03,PPR_3|PF13812.2|4.6,PPR_3|PF13812.2|0.0065,PPR_3|PF13812.2|1.6e+04,PPR_3|PF13812.2|0.045,PPR_3|PF13812.2|0.0021,PPR_3|PF13812.2|0.11,PPR_3|PF13812.2|0.078,PPR_3|PF13812.2|14,PPR_3|PF13812.2|6.3,TPR_19|PF14559.2|2.8e+03,TPR_19|PF14559.2|1.6e+02,TPR_19|PF14559.2|86,TPR_19|PF14559.2|1.9e+03,TPR_19|PF14559.2|3.1,TPR_19|PF14559.2|62 R_Transcript_144304:120-1664(+)
MNLPARQSTTQLQQPVIPSNPTQPTFSKSIHNNFNPTKSQNVSLRHFHKHVDPIVSWTNAIARHCQNGNLSEAATEFARMRLSGVDPNHITFITLLSGCAHFPSKGRSFGPIIHAYVRKLGLDKHNVKVGTALVDMYSKCSLVEHARVTFDEILDKNSVSWNTMINGYMRNHKVAYAVKLFVEMPVRDAISWTALINGFVKKGLDEKALKYFVEMQLAGVPPDYVTIIAVLSACANLGALNLGLWINRFVMGKEFKDNIRVCNTLIDMYSRCGHVDFAREIFERMPKRSLVSWNSMIGGFAANGHAEAALRLFDMIQREGFAPDGVSFTGALTACSHAGLVDQGLQYFDEMQRVHKLPPRIEHYGCLVDLYSRAGRLEDALNVIKSMPMKPNDVVLGSLLAACRNCGDVGLAETLMKYLLELDPGCDSNYVLLANMYAVAGSWEGAGKVRRKMKTHGIQKRPGISSIEIGDIIHEFVAGDRSHPETGPIYGVLELLSYELGICGYVPEATVMET*

Click here to download the sequence:
Link to NCBI Protein BLAST