Transcript Information: R_Transcript_146068.p1


Annotated TAIR IDAT5G48050.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34070.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:19472661-19473770 | Reverse length=369
E-Value4E-06
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.5285730848779
Replicate 20.93087046180632
Replicate 30.45136428760892
Condition 2: 8 Hour
Replicate 11.2062002437067
Replicate 20.44060850918592
Replicate 30.80475120977085
Condition 3: 24 Hour
Replicate 10.56546323220946
Replicate 20.54323297760043
Replicate 30.75474843747922


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_146068.p1 GENE.R_Transcript_146068~~R_Transcript_146068.p1 ORF type:3prime_partial len:203 (-),score=43.92,UBN2_2|PF14227.2|6e+02,UBN2_2|PF14227.2|6.5e-33,UBN2|PF14223.2|2.8e-22,UBN2_3|PF14244.2|2.3e-06 R_Transcript_146068:2-607(-)
ATGGAAGATAAAAGTGGTGTCCATGGAATGATATATTTGAACTCCGGGAACTACTCTGTGTGGAAAACTAAAATGGAAGACATCCTTTATTGTAAGGATTTGTATGAACCCATTTTAAAGAAAGATATACCAACCGGAGCTATTGAAAGTGAGTGGAAAATTTTGAATAGGAAGGCCGTTGGAACCATTAGACAATTTGTAGATATGAGTGTGCTTCAACATGTTGCCAATGACACTAATGCCTATGAATTGTGGATGAAACTTGGGGCTATGTTTGAGAGGAAGAATGCCTTAAGTAAAGCGTCATTGATGAGAAAGCTTGTAAAGTTGGAGTACAAAGATGGTGATAGCATTGTGGTACATTTAAATGAGTTTCAAAGTCTCATTAACCAATTGTCATCTATGAAGATGTCTCTTGATGATGAGATGCAGGCACTACTACTACTTTGCTCATTACCGGAAAGTTGGGACACTCTTGTGGTGTCACTTAGTAACTCTGCTCCAGAGGGCAAGCTAACAATGGAGATGGTCAAGGCTAGTTTGCTAAATGAAGAGACAAGGAGGAAAGATATGGGCTCCTCCAACAATGAGGCCAATGTAGTTCAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_146068.p1 GENE.R_Transcript_146068~~R_Transcript_146068.p1 ORF type:3prime_partial len:203 (-),score=43.92,UBN2_2|PF14227.2|6e+02,UBN2_2|PF14227.2|6.5e-33,UBN2|PF14223.2|2.8e-22,UBN2_3|PF14244.2|2.3e-06 R_Transcript_146068:2-607(-)
MEDKSGVHGMIYLNSGNYSVWKTKMEDILYCKDLYEPILKKDIPTGAIESEWKILNRKAVGTIRQFVDMSVLQHVANDTNAYELWMKLGAMFERKNALSKASLMRKLVKLEYKDGDSIVVHLNEFQSLINQLSSMKMSLDDEMQALLLLCSLPESWDTLVVSLSNSAPEGKLTMEMVKASLLNEETRRKDMGSSNNEANVVQ

Click here to download the sequence:
Link to NCBI Protein BLAST