Transcript Information: R_Transcript_147162.p1


Annotated TAIR IDAT1G25360.1
Annotated Gene NamePentatricopeptide repeat (PPR) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:8894428-8896800 | Forward length=790
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.95067504972493
Replicate 20.53462801985944
Replicate 30.76886040542641
Condition 2: 8 Hour
Replicate 10.90688388693501
Replicate 20.49173235530385
Replicate 30.94539638647849
Condition 3: 24 Hour
Replicate 11.7802929215928
Replicate 21.0721306405142
Replicate 31.7226434244317


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_147162.p1 GENE.R_Transcript_147162~~R_Transcript_147162.p1 ORF type:complete len:864 (+),score=141.58,PPR_2|PF13041.2|4.7e+02,PPR_2|PF13041.2|0.0015,PPR_2|PF13041.2|7.7e-14,PPR_2|PF13041.2|3e+02,PPR_2|PF13041.2|5.7e-05,PPR_2|PF13041.2|3.5e-11,PPR_2|PF13041.2|0.01,PPR_2|PF13041.2|1.6e-05,PPR_2|PF13041.2|0.00065,PPR_2|PF13041.2|29,PPR_2|PF13041.2|7.1e-10,PPR_2|PF13041.2|1.2,PPR_2|PF13041.2|0.018,PPR_2|PF13041.2|65,PPR|PF01535.16|6.2e+02,PPR|PF01535.16|0.00074,PPR|PF01535.16|4.8e-07,PPR|PF01535.16|8.9e+02,PPR|PF01535.16|1.3e+03,PPR|PF01535.16|3e-06,PPR|PF01535.16|2.1e-07,PPR|PF01535.16|18,PPR|PF01535.16|0.001,PPR|PF01535.16|0.00039,PPR|PF01535.16|3.8e-05,PPR|PF01535.16|2.3,PPR|PF01535.16|1.6e-06,PPR|PF01535.16|1.4,PPR|PF01535.16|0.00032,PPR|PF01535.16|6e+03,PPR|PF01535.16|2.6,PPR|PF01535.16|5.8e+03,PPR_1|PF12854.3|5e+02,PPR_1|PF12854.3|0.0012,PPR_1|PF12854.3|0.0001,PPR_1|PF12854.3|6.6,PPR_1|PF12854.3|4.4e+03,PPR_1|PF12854.3|2.8e-05,PPR_1|PF12854.3|0.96,PPR_1|PF12854.3|1.4e+03,PPR_1|PF12854.3|0.00047,PPR_1|PF12854.3|0.042,PPR_1|PF12854.3|0.57,PPR_1|PF12854.3|3e+02,PPR_1|PF12854.3|0.0016,PPR_1|PF12854.3|12,PPR_1|PF12854.3|0.00023,PPR_3|PF13812.2|2,PPR_3|PF13812.2|0.31,PPR_3|PF13812.2|7.7e+02,PPR_3|PF13812.2|0.026,PPR_3|PF13812.2|2.8,PPR_3|PF13812.2|3.6e+02,PPR_3|PF13812.2|0.2,PPR_3|PF13812.2|0.82,PPR_3|PF13812.2|0.055,PPR_3|PF13812.2|1.5e+03,PPR_3|PF13812.2|8.6,PPR_3|PF13812.2|0.82,PPR_3|PF13812.2|0.28,PPR_3|PF13812.2|0.31,PPR_3|PF13812.2|8e+02,PPR_3|PF13812.2|8.8,PPR_3|PF13812.2|6.1e+03,DYW_deaminase|PF14432.2|4.3e-41,TPR_19|PF14559.2|2,TPR_19|PF14559.2|1.5e+04,TPR_19|PF14559.2|2.3e+03,TPR_19|PF14559.2|6.4e+02,TPR_19|PF14559.2|24,TPR_19|PF14559.2|7e+03,TPR_19|PF14559.2|3e+03,TPR_19|PF14559.2|9.3,TPR_19|PF14559.2|1.1e+02,TPR_14|PF13428.2|3.5e+03,TPR_14|PF13428.2|9.6e+02,TPR_14|PF13428.2|3.7e+03,TPR_14|PF13428.2|7.7e+02,TPR_14|PF13428.2|5.8e+02,TPR_14|PF13428.2|3.1e+03,TPR_14|PF13428.2|3.5e+03,TPR_14|PF13428.2|2.6e+03,TPR_14|PF13428.2|1.6 R_Transcript_147162:143-2734(+)
ATGTTGCTCCATTTGTCAATAAACTTGCCCAAAAACTCTCATCTTAACCCATCATTCTGCTGGTTTCGTAATGGACTCATCACTCTTACTTCCAGCCAGTCATCGCCATTAAAATCTGCCCATTTTCATTCAGTTCCTTCACCAGCAATCAAAGAATGCAACAACTGCAACAAAAACAAAATTATAACTTTACATTCTTCAAGAACCAACCATTTTTACAACCCAAGTATTTTATTCCCTGCAGGTTATGCTTCTCTCCTTCGTTCTTGTATTTCCCAAAGAGCAATTGATCCCGGTAAACAGATTCATGCCCAACTTTGCCTAAGTGGGCATGGCTTCAATGTGGGTTTAGCTACAAAAATCATTGATCTTTATTGCAACTGTAATGCCTTAGTTTATGCACACCACCTGTTCGACAAAATTCCTCAACCAGATATTGTGGCAAGCACTACTATGGTCACTGCGTACTGTAATTTGGGGGACATGAAGGAGGCAAGAAAGATTTTTGATGAGACTCCACTTAGTATACGGGACGTTGTGTGTTATAACGCGATGATTACGGGGTATAATCACAATGGTAATGGTGGCGATGCTGTCGAGTTGTTTCGAGATATGATGTGTAAAGGGATAAGGCCTGATCATTTCACTTACAGTGGTGTTCTTAGTTCGTTGAGCTTGATAGCGGATGATGAAAGGGAGTGTTACCAGCTGCATTGTGCTGTGGTGAAGTCTGGGACAGGGTGCTCCACCTCAGTATTGAATGCACTTATATCTCTATATGTGAAGTGTGCATCTTCACCTTATGCTGCATCTTGTTCTTTGTTATGCGCTGCCCATGAGCTTTTTGATGTGATGCATAGGAAAGATGAGCTCACATGGACTACTATGATCACAGGGTATGCGAGGAATGAGGATCTTAATTCAGCAAGGGAAATTTTTGATTCAATGAGTGAGAAGCCAGTGGCCGTGTGGAATGCCATGATCTCGGGGTATGTACATCATGATTTATATTCTGAGGCATTGGAACTATTTAGAAGAATGGATATTGAAGGAATTCACCATGATGAGTATACATACACAAATGTCTTAGGTGCCTGTGCTGATGTTGGATTGTTTAGGCTCGGAAAGGAGATGCATGCTCGCATTTTGCGGAAAGAAGTAAAACGCGGACCTGATTTTTTGTCATCTGTAAATAATGCACTAGTCACATTGTATTGCAAAAGTGGCAAAATTCATGAAGCACGTCATATATTTGAACAGATGCCCATAAGGGATGTAGTTTCGTGGAATGCTATATTGTCAGGTTACGTGAATGCTGCACAAATTTTAGAAGCCACAGAATTTTTCAAGAAAATGCCGCAGAAAAATCTTTTGACATGGGCTGTGATGATAGCGGCTTATGCACAGAGTGGACTTGGGGAAGAGGGCCTGAAGTTATTGAATCAAATGAGACTGGAAGGATTTCAGCCTTGTGATTATGCATTTGCTGGGGCAGTGACTGCATGTTCAAATCTTGGAGCACTAGATCAGGGGAGGCAGCTCCATGCTCAAATTATCCGCCTTGGATACGAGTCAAGCCTTTCAGCAGCAAATGCTTTAATAACAATGTATGGAAGATGTGGTGTTGTTGAGGCTGCACACTTGATCTTTGTCACAATGCCTTCTCTAGATTCTGTCTCTTGGAATGCCATGATTGCAGCTTTTGGTCAGCATGGGCACGGTGGTCAAGCACTGGAATTTTTTGATCAGATGCTTGAAGTAGGAATACTACCTGATCGGATTACGTTTCTTACTATTCTCACTGCCTGTAGTCACTCTGGGCTGGTTCATGAAGGGCGTCGTCATTTTGATTTGATGCAACTGTACCATATTAGTCCAGGAGAAGACCATTATGCCCGGATGATTGACTTGTTTTGTCGAGCTGGGAAATTCTCTGAAGCCAAAGAACTGATTGATAAAATGCCATATGAGCCAAAGGCACCAATCTGGGAAGCTTTACTTGCTGGATGCAGGACACATGGAAATTTGGATTTGGGTATTGAGGCTGCAGAAAGACTCTTGGACTTGGTTCCAAAACATGATGGCACCTACATATTGCTGTCGAACATGTATGCCACAGCAGGCCAGTGGGATGGTGTGGCTAAGGTAAGGAAGTTAATGAGAGATAGAGGAGTGAAAAAAGAGCCAGCTTGTAGTTGGATAGATGTCGATAGTAAGGTGCACGTCTTCTTGGTCAATGACACTTCACACCCTGAAGTACAAGCAGTTTATGATTATCTTGAACAGTTGGGACCCAGATTGAGAGAACTTGGGTACGTTCCTGACACTAAGCATGTGTTGCATGATGTGGAATCTGAACAGAAAGAGTACAGTTTGTCTACTCACAGTGAGAAGCTAGCAGTTGTGTACGGGCTCCTGAAGCTTCCTGTTGGAGCCACGATTAGGGTATTCAAGAATATTAGGATCTGTGGAGACTGTCATAATGCAATGAAGTACATTTCAAAACTGGAGAAAAGAGAAATTGTAATCAGAGATGGAAAGAGATTCCACCATTTTAGGGATGGTGGATGCTCTTGTGGTGATTATTGGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_147162.p1 GENE.R_Transcript_147162~~R_Transcript_147162.p1 ORF type:complete len:864 (+),score=141.58,PPR_2|PF13041.2|4.7e+02,PPR_2|PF13041.2|0.0015,PPR_2|PF13041.2|7.7e-14,PPR_2|PF13041.2|3e+02,PPR_2|PF13041.2|5.7e-05,PPR_2|PF13041.2|3.5e-11,PPR_2|PF13041.2|0.01,PPR_2|PF13041.2|1.6e-05,PPR_2|PF13041.2|0.00065,PPR_2|PF13041.2|29,PPR_2|PF13041.2|7.1e-10,PPR_2|PF13041.2|1.2,PPR_2|PF13041.2|0.018,PPR_2|PF13041.2|65,PPR|PF01535.16|6.2e+02,PPR|PF01535.16|0.00074,PPR|PF01535.16|4.8e-07,PPR|PF01535.16|8.9e+02,PPR|PF01535.16|1.3e+03,PPR|PF01535.16|3e-06,PPR|PF01535.16|2.1e-07,PPR|PF01535.16|18,PPR|PF01535.16|0.001,PPR|PF01535.16|0.00039,PPR|PF01535.16|3.8e-05,PPR|PF01535.16|2.3,PPR|PF01535.16|1.6e-06,PPR|PF01535.16|1.4,PPR|PF01535.16|0.00032,PPR|PF01535.16|6e+03,PPR|PF01535.16|2.6,PPR|PF01535.16|5.8e+03,PPR_1|PF12854.3|5e+02,PPR_1|PF12854.3|0.0012,PPR_1|PF12854.3|0.0001,PPR_1|PF12854.3|6.6,PPR_1|PF12854.3|4.4e+03,PPR_1|PF12854.3|2.8e-05,PPR_1|PF12854.3|0.96,PPR_1|PF12854.3|1.4e+03,PPR_1|PF12854.3|0.00047,PPR_1|PF12854.3|0.042,PPR_1|PF12854.3|0.57,PPR_1|PF12854.3|3e+02,PPR_1|PF12854.3|0.0016,PPR_1|PF12854.3|12,PPR_1|PF12854.3|0.00023,PPR_3|PF13812.2|2,PPR_3|PF13812.2|0.31,PPR_3|PF13812.2|7.7e+02,PPR_3|PF13812.2|0.026,PPR_3|PF13812.2|2.8,PPR_3|PF13812.2|3.6e+02,PPR_3|PF13812.2|0.2,PPR_3|PF13812.2|0.82,PPR_3|PF13812.2|0.055,PPR_3|PF13812.2|1.5e+03,PPR_3|PF13812.2|8.6,PPR_3|PF13812.2|0.82,PPR_3|PF13812.2|0.28,PPR_3|PF13812.2|0.31,PPR_3|PF13812.2|8e+02,PPR_3|PF13812.2|8.8,PPR_3|PF13812.2|6.1e+03,DYW_deaminase|PF14432.2|4.3e-41,TPR_19|PF14559.2|2,TPR_19|PF14559.2|1.5e+04,TPR_19|PF14559.2|2.3e+03,TPR_19|PF14559.2|6.4e+02,TPR_19|PF14559.2|24,TPR_19|PF14559.2|7e+03,TPR_19|PF14559.2|3e+03,TPR_19|PF14559.2|9.3,TPR_19|PF14559.2|1.1e+02,TPR_14|PF13428.2|3.5e+03,TPR_14|PF13428.2|9.6e+02,TPR_14|PF13428.2|3.7e+03,TPR_14|PF13428.2|7.7e+02,TPR_14|PF13428.2|5.8e+02,TPR_14|PF13428.2|3.1e+03,TPR_14|PF13428.2|3.5e+03,TPR_14|PF13428.2|2.6e+03,TPR_14|PF13428.2|1.6 R_Transcript_147162:143-2734(+)
MLLHLSINLPKNSHLNPSFCWFRNGLITLTSSQSSPLKSAHFHSVPSPAIKECNNCNKNKIITLHSSRTNHFYNPSILFPAGYASLLRSCISQRAIDPGKQIHAQLCLSGHGFNVGLATKIIDLYCNCNALVYAHHLFDKIPQPDIVASTTMVTAYCNLGDMKEARKIFDETPLSIRDVVCYNAMITGYNHNGNGGDAVELFRDMMCKGIRPDHFTYSGVLSSLSLIADDERECYQLHCAVVKSGTGCSTSVLNALISLYVKCASSPYAASCSLLCAAHELFDVMHRKDELTWTTMITGYARNEDLNSAREIFDSMSEKPVAVWNAMISGYVHHDLYSEALELFRRMDIEGIHHDEYTYTNVLGACADVGLFRLGKEMHARILRKEVKRGPDFLSSVNNALVTLYCKSGKIHEARHIFEQMPIRDVVSWNAILSGYVNAAQILEATEFFKKMPQKNLLTWAVMIAAYAQSGLGEEGLKLLNQMRLEGFQPCDYAFAGAVTACSNLGALDQGRQLHAQIIRLGYESSLSAANALITMYGRCGVVEAAHLIFVTMPSLDSVSWNAMIAAFGQHGHGGQALEFFDQMLEVGILPDRITFLTILTACSHSGLVHEGRRHFDLMQLYHISPGEDHYARMIDLFCRAGKFSEAKELIDKMPYEPKAPIWEALLAGCRTHGNLDLGIEAAERLLDLVPKHDGTYILLSNMYATAGQWDGVAKVRKLMRDRGVKKEPACSWIDVDSKVHVFLVNDTSHPEVQAVYDYLEQLGPRLRELGYVPDTKHVLHDVESEQKEYSLSTHSEKLAVVYGLLKLPVGATIRVFKNIRICGDCHNAMKYISKLEKREIVIRDGKRFHHFRDGGCSCGDYW*

Click here to download the sequence:
Link to NCBI Protein BLAST