Transcript Information: R_Transcript_147177.p1


Annotated TAIR IDAT5G55210.1
Annotated Gene Nameunknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G22320.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:22396707-22397374 | Reverse length=168
E-Value3E-11
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.8841766146806
Replicate 23.6574200725164
Replicate 34.1379913076921
Condition 2: 8 Hour
Replicate 13.3174397670461
Replicate 23.1738025839102
Replicate 32.6934648017348
Condition 3: 24 Hour
Replicate 16.2208251842811
Replicate 25.5493877208549
Replicate 36.3544949090992


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_147177.p1 GENE.R_Transcript_147177~~R_Transcript_147177.p1 ORF type:5prime_partial len:155 (-),score=29.57 R_Transcript_147177:51-515(-)
CCACAAAAGCAATCCCCCAAACTCAATACCAACAAACACAAAAGGGCAACTCAAGAAACACAACAAAGCCCCCCCAAAAAAAAAATGGAGGGAGGAGTGGGACCCACAACAACAACAACATCAAACTCACACTCGAGACCAGTCAGAGCTTCTCGCTTCTACAACAATGTCCACTCTTCTTCTGCAATCAACCACCATAACAGCAGCACCTTCACTGGTCCTGTAAGAAAGTGGGAAAAGAATTGGGTCCATGTGTCATCATCTAAACCCTCCACTACTAAGCAAAAGAAACAATCCAACGGTGGTAGTGGTCCTAACACTTCTTCCAAGTCTCCTATTCTTCTTTGCAAATGGACCCCACTTTCTACCACCACCATTGCTGGTGATGATGATGGAGATAACAAGAACTCTGTTGAGGTTCCCAAGCGTAAATTCCGTTATACTCCGCTTTTGAATAGAAACTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_147177.p1 GENE.R_Transcript_147177~~R_Transcript_147177.p1 ORF type:5prime_partial len:155 (-),score=29.57 R_Transcript_147177:51-515(-)
PQKQSPKLNTNKHKRATQETQQSPPKKKMEGGVGPTTTTTSNSHSRPVRASRFYNNVHSSSAINHHNSSTFTGPVRKWEKNWVHVSSSKPSTTKQKKQSNGGSGPNTSSKSPILLCKWTPLSTTTIAGDDDGDNKNSVEVPKRKFRYTPLLNRN*

Click here to download the sequence:
Link to NCBI Protein BLAST