Transcript Information: R_Transcript_148083.p1


Annotated TAIR IDAT5G16860.1
Annotated Gene NameTetratricopeptide repeat (TPR)-like superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:5543834-5546386 | Forward length=850
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.94485915530309
Replicate 20.39522447842443
Replicate 30.80847309162891
Condition 2: 8 Hour
Replicate 10.60494489869665
Replicate 20.76290067458163
Replicate 31.5161933577029
Condition 3: 24 Hour
Replicate 11.3234500637147
Replicate 20.46705254121223
Replicate 31.9055178198005


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_148083.p1 GENE.R_Transcript_148083~~R_Transcript_148083.p1 ORF type:5prime_partial len:850 (+),score=148.47,PPR_2|PF13041.2|3.5e-06,PPR_2|PF13041.2|0.13,PPR_2|PF13041.2|3.5e-05,PPR_2|PF13041.2|0.017,PPR_2|PF13041.2|1.7e-12,PPR_2|PF13041.2|1.6e-09,PPR_2|PF13041.2|5.4e+02,PPR_2|PF13041.2|8.4e-08,PPR_2|PF13041.2|0.0097,PPR_2|PF13041.2|1.4e-08,PPR_2|PF13041.2|0.75,PPR_2|PF13041.2|8,PPR|PF01535.16|11,PPR|PF01535.16|0.0027,PPR|PF01535.16|0.00053,PPR|PF01535.16|0.0003,PPR|PF01535.16|8.5e-10,PPR|PF01535.16|0.00035,PPR|PF01535.16|5.3e+03,PPR|PF01535.16|16,PPR|PF01535.16|1.4e-05,PPR|PF01535.16|4.2e+03,PPR|PF01535.16|0.00097,PPR|PF01535.16|1.7e-06,PPR|PF01535.16|0.58,PPR|PF01535.16|0.19,PPR|PF01535.16|3.9e+02,DYW_deaminase|PF14432.2|4.1e-51,PPR_1|PF12854.3|6.2e+02,PPR_1|PF12854.3|0.15,PPR_1|PF12854.3|0.094,PPR_1|PF12854.3|0.0045,PPR_1|PF12854.3|9e-08,PPR_1|PF12854.3|1.2,PPR_1|PF12854.3|38,PPR_1|PF12854.3|0.00027,PPR_1|PF12854.3|1.2,PPR_1|PF12854.3|0.0018,PPR_1|PF12854.3|4.2e+02,PPR_1|PF12854.3|0.12,PPR_3|PF13812.2|45,PPR_3|PF13812.2|0.079,PPR_3|PF13812.2|1.6e+02,PPR_3|PF13812.2|3.9,PPR_3|PF13812.2|3e-05,PPR_3|PF13812.2|0.098,PPR_3|PF13812.2|1.3e+04,PPR_3|PF13812.2|0.81,PPR_3|PF13812.2|0.01,PPR_3|PF13812.2|0.0011,PPR_3|PF13812.2|0.15,PPR_3|PF13812.2|2.2,PPR_3|PF13812.2|1.7e+03 R_Transcript_148083:2-2551(+)
CCCAAACCCCTCTCACTCACACTTACTTTCCAAACCCCTTTCTCCTCCACCCCATCCTCACCATCACCAACTCCCATCCCTCTGTTACCCTACCTTTTCCAACAATGCAAATCCTTAACTTCTGCAAAGCTCATCCATCAGCAGGTCCTAGTCCAAGGCCTCACTTCCCACCACTTCAACGACATCGTTTCCATCTACTTCTCTTGCAACGCAACATCCCACGTCATCACCCTCCTCGAACGTCTCCCCCCCTATCAAGCTTCCCTTCCATGGTGGAATGCCCTGATTCAGAAATCTGTTCGTCTCTCTCACCTCCATCAAACCCTCCACCTATTTCGCAAAATGAAGAGTCTTGACTGCTCCCCTGATTCTTACACCTTCCCCTTTGTCATCAAGGCCTGTGGTGAAATTCCCTCTCTACCCCTTGGAAAGTCACTTCATTGCCAAGCTTATGTCACTGGGTTGGGCGCCAATCTGTTTGTCGGTAATTCTCTTGTGGCTACGTACGGCAGGTGTGGCTCATTGCACCTTGCACGCCAGATGTTCGACGAAATGTCTGAGAGAGGTGTTTTTGATCTTGTGTCGTGGAATTCTATCGTGGCTGCTTATGCTCAGAATGATTGTTTTGGTATTGCGTTTAAATTGTTTGAGAGAATGAGTAATGAGTTTAGCATCCGTCCTAATGCTGTTAGTCTTGTTAATGTGCTTCCAGGCTGTGCTGCTCTGGGCTCTGTTTTGTTAGGGAAACAGGTGCATGGTTTTTCTGTGAGGAATGAGTTGTTCGACGACGTCTTTGTTGGGAATGCTCTGGTGGATATGTATGCCAAGTGTGGGATGATAGATGAAGCGAGTAAGGTGTTCAAGGGGATGAGGATCCGGGATGTCGTTTCGTGGAATGCTATGGTTACTGGCTATGCTCAAGCTGGTAAATTTGATGAGGCTTTGAGCTTATTAGAAGAAATGAGGGAGGATGATGTGGAGTGCAATATTGTTACTTGGAGTGCAGTCATTGCTGCATATGCACAGAGAGAAAGTGGTTACGAAGCTCTTGATGTGTTTCGGCAAATGACATGTTCAGGGTTGAAGCCGAATGCTGTGACCCTTATTTCTTTGCTTTCGGGTTGTGCTTCGGTGGGGGCATTGCCCCAAGGAAGGGAGGCTCATTGTTATGCAATGAAATGTATTCTCAAGCTGGACAATGCAGAGCGTGGGGATTACCTAGCTATTTTGAATGGCCTCATTGACTTGTACACAAAGTGCAGAGAATTTAGGATTGCTCGCAGAATCTTTGACTCTGTTAGGATAGAAGATAGAAATGTGGTAACTTGGACTGCTATGATTGGTGGGTATGCTCAGCATGGTGATGCTAATGAAGCTATAGGACTGTTCCCCGAGATTACGCAGCAAACCCATACACCTCCCAATGCATTTACTATGTCGTGTGTTCTGATGGCTTGCGCCCACTTGGGGGCTTTAAGGTTTGGTGAACAGGTTCATGGTTACATATTATGCAATCAGTTTGAGCCTTCCGCTTTGTTTGTGGATAATTGTTTGATAGATATGTATGTAAAATGTGGCAATGTGGATGCTGCTAAGACAGTGCTTTGTAATATGAAGGAGAGAAATGCTGTCTCATGGACATCATTAATGGCTGGCTATGGCATGCATGGCCGAGGTGGAGATGCTCTTCAGATATTTGAGCAGATGAGACAAGCGGGGCTAGCCCCAGATGGTGTTACTTTTGTTGTCGCCCTTTATGCATGTAGCCATTCAGGCATGGTCGAACAGGGACTGAGATACTTTAACGACATGACAAGGGAATTCGGGGTTGTACCACAAGCAGAACACTATGCTTGTATGGTCGACCTTTTGGGCCGAGCAGGTTGCTTAGAAGCAGCCAGGAAACTCATTGAGGACATGCCTATGGAGCCTCCTCCAATTGTCTGGATAGCATTGCTCGGTGCTTGTAGGATTCATGCAAATGTGGAACTTGGTGAATATGCTGCAAGTAGACTGTCAGAATTGGAGTCGCAAGATGATGGGGCATATACCCTTTTGTCAAACATCTATGCTGGCGCAAGACGTTGGAAAGATGTATCCAGTGTCAGATATTTTATGAGACATTCAGGGGTGAAGAAAAAGCCTGGCTGTAGCTGGGTTCAAGGGAAGAAAGGCATTGTAACATTTTATGTGGGAGATCGGTCACATCCACAGTCACAGCAGATATACGAGCTTTTATCTAACTTAATCAAACGCATTAAAGCCATAGGATATGTGCCAGAGACTAGCTTTGCGCTCCATGATGTAGATGAAGAGGAAAAAGATGATGTTCTGTTTGAGCATAGCGAAAAGTTGGCTCTTGCCTATGCTATCCTCACATCAGCTTCTGGTGCTACCATCCGAATCACCAAGAACTTGCGTGTGTGTGGTGATTGCCATACTGTGTTCACTTTTATATCCCAGATTGTTGACCATGAGATTTTACTGAGGGATTCTAGTCGTTTCCATCACTTCAAGGATGGGTCTTGCTCTTGCAAAGGCTACTGGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_148083.p1 GENE.R_Transcript_148083~~R_Transcript_148083.p1 ORF type:5prime_partial len:850 (+),score=148.47,PPR_2|PF13041.2|3.5e-06,PPR_2|PF13041.2|0.13,PPR_2|PF13041.2|3.5e-05,PPR_2|PF13041.2|0.017,PPR_2|PF13041.2|1.7e-12,PPR_2|PF13041.2|1.6e-09,PPR_2|PF13041.2|5.4e+02,PPR_2|PF13041.2|8.4e-08,PPR_2|PF13041.2|0.0097,PPR_2|PF13041.2|1.4e-08,PPR_2|PF13041.2|0.75,PPR_2|PF13041.2|8,PPR|PF01535.16|11,PPR|PF01535.16|0.0027,PPR|PF01535.16|0.00053,PPR|PF01535.16|0.0003,PPR|PF01535.16|8.5e-10,PPR|PF01535.16|0.00035,PPR|PF01535.16|5.3e+03,PPR|PF01535.16|16,PPR|PF01535.16|1.4e-05,PPR|PF01535.16|4.2e+03,PPR|PF01535.16|0.00097,PPR|PF01535.16|1.7e-06,PPR|PF01535.16|0.58,PPR|PF01535.16|0.19,PPR|PF01535.16|3.9e+02,DYW_deaminase|PF14432.2|4.1e-51,PPR_1|PF12854.3|6.2e+02,PPR_1|PF12854.3|0.15,PPR_1|PF12854.3|0.094,PPR_1|PF12854.3|0.0045,PPR_1|PF12854.3|9e-08,PPR_1|PF12854.3|1.2,PPR_1|PF12854.3|38,PPR_1|PF12854.3|0.00027,PPR_1|PF12854.3|1.2,PPR_1|PF12854.3|0.0018,PPR_1|PF12854.3|4.2e+02,PPR_1|PF12854.3|0.12,PPR_3|PF13812.2|45,PPR_3|PF13812.2|0.079,PPR_3|PF13812.2|1.6e+02,PPR_3|PF13812.2|3.9,PPR_3|PF13812.2|3e-05,PPR_3|PF13812.2|0.098,PPR_3|PF13812.2|1.3e+04,PPR_3|PF13812.2|0.81,PPR_3|PF13812.2|0.01,PPR_3|PF13812.2|0.0011,PPR_3|PF13812.2|0.15,PPR_3|PF13812.2|2.2,PPR_3|PF13812.2|1.7e+03 R_Transcript_148083:2-2551(+)
PKPLSLTLTFQTPFSSTPSSPSPTPIPLLPYLFQQCKSLTSAKLIHQQVLVQGLTSHHFNDIVSIYFSCNATSHVITLLERLPPYQASLPWWNALIQKSVRLSHLHQTLHLFRKMKSLDCSPDSYTFPFVIKACGEIPSLPLGKSLHCQAYVTGLGANLFVGNSLVATYGRCGSLHLARQMFDEMSERGVFDLVSWNSIVAAYAQNDCFGIAFKLFERMSNEFSIRPNAVSLVNVLPGCAALGSVLLGKQVHGFSVRNELFDDVFVGNALVDMYAKCGMIDEASKVFKGMRIRDVVSWNAMVTGYAQAGKFDEALSLLEEMREDDVECNIVTWSAVIAAYAQRESGYEALDVFRQMTCSGLKPNAVTLISLLSGCASVGALPQGREAHCYAMKCILKLDNAERGDYLAILNGLIDLYTKCREFRIARRIFDSVRIEDRNVVTWTAMIGGYAQHGDANEAIGLFPEITQQTHTPPNAFTMSCVLMACAHLGALRFGEQVHGYILCNQFEPSALFVDNCLIDMYVKCGNVDAAKTVLCNMKERNAVSWTSLMAGYGMHGRGGDALQIFEQMRQAGLAPDGVTFVVALYACSHSGMVEQGLRYFNDMTREFGVVPQAEHYACMVDLLGRAGCLEAARKLIEDMPMEPPPIVWIALLGACRIHANVELGEYAASRLSELESQDDGAYTLLSNIYAGARRWKDVSSVRYFMRHSGVKKKPGCSWVQGKKGIVTFYVGDRSHPQSQQIYELLSNLIKRIKAIGYVPETSFALHDVDEEEKDDVLFEHSEKLALAYAILTSASGATIRITKNLRVCGDCHTVFTFISQIVDHEILLRDSSRFHHFKDGSCSCKGYW*

Click here to download the sequence:
Link to NCBI Protein BLAST