Transcript Information: R_Transcript_14962.p1


Annotated TAIR IDAT2G27170.1
Annotated Gene NameStructural maintenance of chromosomes (SMC) family protein
Annotated Gene Symbol(s)TTN7, SMC3
Annotation TypeOrtholog
Chromosome Positionchr2:11609319-11617064 | Reverse length=1204
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 120.585704512417
Replicate 212.859144985251
Replicate 315.911153002473
Condition 2: 8 Hour
Replicate 115.626249082516
Replicate 217.42478676255
Replicate 320.094812089292
Condition 3: 24 Hour
Replicate 120.785865299108
Replicate 214.130008185499
Replicate 319.58086776139


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_14962.p1 GENE.R_Transcript_14962~~R_Transcript_14962.p1 ORF type:complete len:1205 (+),score=314.37,SMC_N|PF02463.15|9.6e-63,SMC_hinge|PF06470.9|6.1e-29,AAA_23|PF13476.2|9.1e-13,AAA_23|PF13476.2|1.6e+04,AAA_23|PF13476.2|1.6e+04,AAA_23|PF13476.2|1.6e+04,AAA_23|PF13476.2|2e+02,AAA_21|PF13304.2|4.5e-06,AAA_21|PF13304.2|2e+03,AAA_21|PF13304.2|2.2e+03,AAA_21|PF13304.2|6.3e+03,AAA_21|PF13304.2|8e-08 R_Transcript_14962:209-3823(+)
ATGCATATAAAGCAGGTCATTATCGAAGGGTTTAAGAGCTACAAAGAGCAAGTCGCTACTGAAGATTTCAGTCCCAAAGTCAACTGTGTTGTTGGTGCTAATGGATCGGGGAAGTCAAACTTTTTTCATGCTATTCGTTTTGTGCTCAGCGATCTTTTTCAAAACCTTCGCAGTGAAGACAGACATGCTTTACTTCATGAAGGAACAGGAAATCAAGTTTTGACTGCGTTTGTGGAGATTGTGTTTGACAACTTTGACAATAGAATTCCGGTTGACAAAGAGGAAGTTCGTTTGCGACGAACAATTGGGCTAAAAAAAGATGAATATTTTTTGGATGGGAAGCATATCACGAAAACTGAAGTTATGAATCTTTTGGAAAGTGCTGGTTTCTCTCGATCAAACCCTTACTACGTTGTACAGCAAGGAAAGATAGCATCACTGACACTTATGAAAGACTCTGAACGACTAGATTTGCTGAAAGAAATTGGTGGAACCAGGGTTTATGAGGAGAGGCGGCGTGAGAGTTTGAAAATCATGCAAGAAACAGGAAACAAAAGAAAACAGATAATTGAAGTGGTTAAATACCTGGATGAGCGGTTGAAGGAGCTGGATGAAGAGAAGGAGGATCTCAGAAAATATCAACAGCTTGACAGGCAAAGGAAATCCCTGGAATACACCTTATATGATAAGGAACTTCAGGATGCTCGGCAGAGGTTGGCCAAGGTGGAAGAAGATCGTGACAAGGTTTCTGAGAAATCAACTAAAATGTATCATGCCGTGCTTCAGTCTGAGGAAAAGTGTAAGGAACTGGACGAGGATTTTAAAAGGCTTACCAAAGAGCAGCAAGTGTTAAGCAAAGAGAAAATGGTGATCGAGAAACATCGAGCTGAAGCAATTCAAAGGAAGACAGAACTTGAGCTTGACTGCAGAGACCTAAAAGAGAGGATCTCTAGAAGTTCTAGTGCACAGAATGAGGCAGCCAAACAGCTTGAGCATGTGAAGAAGGATATTTTTGACTCGAAAAATGATCTAGACAATATTCAGCCTTTGTATGACGAGTTAAAGAAGAAGGAGGATGAAATGACAAAAGGAATAATGGAGCGTGAAAAGAAGCTTAGCATTCTTTATCAAAAACAAGGTCGCGCCACTCAGTTTTCGAGTAAAGCAGCTCGTGACAAATGGCTTAAAAATGAGATTGACGAGCTTGATCAAGTTCTTCGGACAAATGAGTCGCAGGAAAAGAAACTCTGGGATGAAATCAAACACCTTGATTCCCAGTTGGAGGATCAAGATGATTTTGTTAACAACCGGAAAGCTTATTATGCAGAAGTAGAGAACAGCATTAAACAGGCTGAAAGAGAGACTCTTCCATCCAAGGGACAGAGGGACAGGCTGCAGGATGAGCGGAAGTCTTTATGGGAACAAGAAAATGAACTTTCCTCTGAAATTGAGAAGTTGAAGTCAGAAGTTGTGAAGGCCGAAAAGAACCTTGACCATGCAACTCCTGGTGATATTAGGAGAGGGCTAAATTCTGTTAGGAAAATTATCAGGGAATATGGGATTGGTGGTGTATTCGGGCCAATTATTGAATTATTGAACTGCGATGAGAGATTTTTCACTGCAGTTGAAGTTACTGCTGGGAACAGCTTGTTCCACGTTGTGGTTGATACAGATGAAACAGCTACTCAGATAATTAGACAACTAAATGCAACTAAGGGAGGGCGTGTGACATTTATACCTCTGAACAAGGTTAAGCCCCCACAAGTTACATGCCCACAGAGCGATGATGTGGTACCTTTGTTGAAAAAATTGAGATTTCATCAAGACTACACAAAAGCTTTCTCTCAGGTATTTGGTAGAACTGTAGTATGTCGAAACCTGGATGTTGCTACAAGAGTTGCTCGTACTGATGGTTTAGATTGCATAACTCTGGAAGGTGACCAAGTCAGCAAGAAAGGTGGGATGACTGGAGGATTTTATGATAGTAGGCGATCGAAACTGAAGTTCATGAACATTATTAAAACGAATACAATTGTTATAGACCGAAAGGAGATTGAGTTGAAAGAAGTGAGGGAAAAACTTCAAGAAATAGATAAAGAAATCACTGAAAAAATCACGGAGCAACAGAAAATTGAAGCTGACTGTGCTCATCAAAGATCAGTACTGGAGCAGCTTAAGCAGGATATTGCTGACGCTAACAAGCAAAAAAAAGCCACGTTGACTGCCCTGGAAAAAAAGAGAAAGTTACTCGACAGTTTGCGCGCACAGATTGAACAGCTGAATGCTAATATAGCTCTGAAAAAAGCTGAAATGGGTACAGAACTTGTTGATCATTTGACCCCAGAGGAAAGAGACCTTCTGTCTCGATTGAACCCGGAAATCAAGGGGATGAAAGAGAAACTCATGGAATATCGGACAGAGCTTGTGGAGATCGAGACAAAGAAACTAGAGCTTGAAACCAATCTTTCCACAAATCTGTTGCGGCGTCAGCAGGAGTTGGAGGCCATGTTATCATCTGCAGAATCCGAAAATTTGTTGGCTGAACTCAAGTCCAAAGAGAATGAGCTAAAGGAAGCTAATTCTTTGGTGGCAGATGCAACTGAGAAGCTCAAAAGATTTTCTGGGTCAATGGATCAAATCTCCAAGGAACTGAAGAAGATTAAAATTGAAAATGATAAATTACAGAAATCAAGAGAAGACTATGAGAAGCAACTGCAGAATGAAGCAGAAGAACTGGAGAAACTAATAAGTAATAAGAATATGCTTCTTGCTAGACAGGAGGAATACTCAAAAAAAATCAGAGACTTGGGTCCATTGTCTTCAGAAGCTTTTGATACTTACAGACGGAAAAGTACCAAAGAATTGCATAAAATGCTGCATAAATGTAATGAGCAACTCCAACAGTTTAGTCATGTCAACAAGAAGGCTCTTGATCAATATGTAAATTTCACTGAGCAACGAGAGGAACTCCAGAAAAGACAAGCTGAACTCGATGCAGGTGATGAGAAAATTCGCGAATTAATCTCAGTTCTGGATCAAAGAAAGGATGAGTCTATTGAGCGTACTTTCAAGGGTGTTGCTAGGAATTTTCGTGAGGTTTTCTCTGAACTTGTGCAAGGTGGGCATGGATTCTTGGTGATGATGAAGAAAAAGGATGGTGACAATGGTGATGATGACCAGGATGAAGATGGACCTCGTGAAACAGACAATGAGGGAAGGATCGAGAAATATATTGGAGTCAAAGTCAAGGTGTCATTTACTGGGCAAGGGGAAACGCAGTCGATGAAGCAGCTATCTGGGGGTCAGAAAACTGTTGTAGCATTGGCATTGATCTTTGCCATACAGCGATGTGATCCAGCTCCATTTTATCTGTTTGACGAGATAGATGCAGCTTTGGATCCTCAATACAGAACTGCTGTCGGAAATATGATTCGTAGGTTGGCTGACCAAGCAAATACCCAATTTATAACCACAACATTTCGACCGGAGCTCGTGAAAATTGCTGACAAGATATACGGGGTGACACATAATAAGCGTGTGAGCCGTGTCAATGTTGTCACTAAAGATGAAGCGCTGCTCTTTATTGAACGAGATCAATCTCACAATGCTGAGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_14962.p1 GENE.R_Transcript_14962~~R_Transcript_14962.p1 ORF type:complete len:1205 (+),score=314.37,SMC_N|PF02463.15|9.6e-63,SMC_hinge|PF06470.9|6.1e-29,AAA_23|PF13476.2|9.1e-13,AAA_23|PF13476.2|1.6e+04,AAA_23|PF13476.2|1.6e+04,AAA_23|PF13476.2|1.6e+04,AAA_23|PF13476.2|2e+02,AAA_21|PF13304.2|4.5e-06,AAA_21|PF13304.2|2e+03,AAA_21|PF13304.2|2.2e+03,AAA_21|PF13304.2|6.3e+03,AAA_21|PF13304.2|8e-08 R_Transcript_14962:209-3823(+)
MHIKQVIIEGFKSYKEQVATEDFSPKVNCVVGANGSGKSNFFHAIRFVLSDLFQNLRSEDRHALLHEGTGNQVLTAFVEIVFDNFDNRIPVDKEEVRLRRTIGLKKDEYFLDGKHITKTEVMNLLESAGFSRSNPYYVVQQGKIASLTLMKDSERLDLLKEIGGTRVYEERRRESLKIMQETGNKRKQIIEVVKYLDERLKELDEEKEDLRKYQQLDRQRKSLEYTLYDKELQDARQRLAKVEEDRDKVSEKSTKMYHAVLQSEEKCKELDEDFKRLTKEQQVLSKEKMVIEKHRAEAIQRKTELELDCRDLKERISRSSSAQNEAAKQLEHVKKDIFDSKNDLDNIQPLYDELKKKEDEMTKGIMEREKKLSILYQKQGRATQFSSKAARDKWLKNEIDELDQVLRTNESQEKKLWDEIKHLDSQLEDQDDFVNNRKAYYAEVENSIKQAERETLPSKGQRDRLQDERKSLWEQENELSSEIEKLKSEVVKAEKNLDHATPGDIRRGLNSVRKIIREYGIGGVFGPIIELLNCDERFFTAVEVTAGNSLFHVVVDTDETATQIIRQLNATKGGRVTFIPLNKVKPPQVTCPQSDDVVPLLKKLRFHQDYTKAFSQVFGRTVVCRNLDVATRVARTDGLDCITLEGDQVSKKGGMTGGFYDSRRSKLKFMNIIKTNTIVIDRKEIELKEVREKLQEIDKEITEKITEQQKIEADCAHQRSVLEQLKQDIADANKQKKATLTALEKKRKLLDSLRAQIEQLNANIALKKAEMGTELVDHLTPEERDLLSRLNPEIKGMKEKLMEYRTELVEIETKKLELETNLSTNLLRRQQELEAMLSSAESENLLAELKSKENELKEANSLVADATEKLKRFSGSMDQISKELKKIKIENDKLQKSREDYEKQLQNEAEELEKLISNKNMLLARQEEYSKKIRDLGPLSSEAFDTYRRKSTKELHKMLHKCNEQLQQFSHVNKKALDQYVNFTEQREELQKRQAELDAGDEKIRELISVLDQRKDESIERTFKGVARNFREVFSELVQGGHGFLVMMKKKDGDNGDDDQDEDGPRETDNEGRIEKYIGVKVKVSFTGQGETQSMKQLSGGQKTVVALALIFAIQRCDPAPFYLFDEIDAALDPQYRTAVGNMIRRLADQANTQFITTTFRPELVKIADKIYGVTHNKRVSRVNVVTKDEALLFIERDQSHNAE*

Click here to download the sequence:
Link to NCBI Protein BLAST