Transcript Information: R_Transcript_150186.p1


Annotated TAIR IDAT3G55530.1
Annotated Gene NameRING/U-box superfamily protein
Annotated Gene Symbol(s)SDIR1
Annotation TypeOrtholog
Chromosome Positionchr3:20595300-20597188 | Reverse length=273
E-Value8.2E-69
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 13.5587533936873
Replicate 23.8295139124066
Replicate 32.4491480448716
Condition 2: 8 Hour
Replicate 13.5419804640669
Replicate 24.0783998326691
Replicate 33.3106711194417
Condition 3: 24 Hour
Replicate 12.8877744940508
Replicate 22.635534081264
Replicate 34.2674141213448


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_150186.p1 GENE.R_Transcript_150186~~R_Transcript_150186.p1 ORF type:5prime_partial len:159 (+),score=42.13,zf-RING_2|PF13639.2|5.4e-13,zf-RING_11|PF17123.1|3.1e-09,zf-RING_11|PF17123.1|4e+03,zf-C3HC4|PF00097.21|1.7e-07,zf-rbx1|PF12678.3|8.5e-07,zf-C3HC4_2|PF13923.2|2.3e-06,zf-C3HC4_3|PF13920.2|7.1e-06,zf-RING_5|PF14634.2|1.2e-05 R_Transcript_150186:1-477(+)
GCGACCAGAGGGCGTCTACAGGGATTAAGGCTTCAGCTTGCACTTCTGGATCGTGAATTTGATGATCTAGATTATGAAACTTTAAGAGCGTTGGACTCTGACAATGGTCCCTCCACTCCTTCAATGAGCGAGGAAGAGATAAATGCCTTACCTGTCCACAAGTATAAAGTTACAGGGCCAGAAAGTGACAATACAGCATTGCAAGAGGCTTCATCTTCGTCACCTTCCTCTGAGGCAAAGCAAGATGGTGGGAGTGCAAAGGGCTTTGAAGATGATCTGACATGTACCATTTGTTTGGATCAAGTGAAGAGGGGAGACCTCCTCTGCACCTTGCCATGTTTACATCAGTTCCATGCCAATTGCATTGATCCATGGCTGCGGCAGCAGGGGACATGCCCTGTGTGCAAACTGAGAGTAGGTTCAGAAATGCAAGATGGATTGAATAATGCAGCAGCAGAAATAGTTGATATGGTCTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_150186.p1 GENE.R_Transcript_150186~~R_Transcript_150186.p1 ORF type:5prime_partial len:159 (+),score=42.13,zf-RING_2|PF13639.2|5.4e-13,zf-RING_11|PF17123.1|3.1e-09,zf-RING_11|PF17123.1|4e+03,zf-C3HC4|PF00097.21|1.7e-07,zf-rbx1|PF12678.3|8.5e-07,zf-C3HC4_2|PF13923.2|2.3e-06,zf-C3HC4_3|PF13920.2|7.1e-06,zf-RING_5|PF14634.2|1.2e-05 R_Transcript_150186:1-477(+)
ATRGRLQGLRLQLALLDREFDDLDYETLRALDSDNGPSTPSMSEEEINALPVHKYKVTGPESDNTALQEASSSSPSSEAKQDGGSAKGFEDDLTCTICLDQVKRGDLLCTLPCLHQFHANCIDPWLRQQGTCPVCKLRVGSEMQDGLNNAAAEIVDMV*

Click here to download the sequence:
Link to NCBI Protein BLAST