Transcript Information: R_Transcript_150806.p1


Annotated TAIR IDAT5G43420.1
Annotated Gene NameRING/U-box superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:17451790-17452917 | Forward length=375
E-Value2.5E-82
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.752284251653
Replicate 22.183615243295
Replicate 32.809893145128
Condition 2: 8 Hour
Replicate 11.1753215174678
Replicate 21.3118384013496
Replicate 31.3069159646679
Condition 3: 24 Hour
Replicate 12.3263911324074
Replicate 22.1761188772036
Replicate 31.4008130999614


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_150806.p1 GENE.R_Transcript_150806~~R_Transcript_150806.p1 ORF type:complete len:375 (+),score=52.38,zf-RING_2|PF13639.2|2.5e-14,zf-RING_11|PF17123.1|5.4e-12,zf-rbx1|PF12678.3|5e-09,zf-rbx1|PF12678.3|9.1e+03,zf-C3HC4|PF00097.21|9e-07,zf-C3HC4_2|PF13923.2|2.5e-06 R_Transcript_150806:73-1197(+)
ATGGATTCAATCACCAAACACTATTATCATGGTCATAAACCCCTCTTTTCTCTCCTCATCAAAACCCAACAAGAGAGCACCAACATTGCATCACAAAACCCTCCAAACATGCACAATTCAACCTCAGACTTCCCCATTGCAATAGCCCTTCTAGCCCTAATGGCAGTGGCACTCCTGGTGGTAAGCTACTACATCTTTGTGATCAAATGCTGCTTGAACTGGCACAACCTTGACCCGTTGAGACGGTTCTCGATATCGAGGAGGGGGGGTGGGACCCACCCCCACCACAGCGACGACTCGCTCATGGCCTTCTCGCCGATGGTGGAGGTCCATCGAGGCCTCGACGAGTGGCTCATCAACAACATCCCTGCATTCCAGTACAAAGGTGGTGACAGTAACAGTAACAGTTGCACAATTTCTATTGCAGGGGAAAGAAGTTTCAGAGGTTGTGCTGTTTGTTTGAATGAGTTCCAAGAGCAAGACATGCTTAGAGTTCTCCCTAGATGCAACCATGTTTTCCATTTAGATTGCATTGATGTTTGGCTCCTCAACAATGCTAGCTGCCCTTTATGCAGATCAAGTATTTCAGGAAGAACAAAGTACCCTATTGATCATATCGTTGCTCCAAGCTCTTCTCCTCAGGATTTTTCTCCCTTTCATGGAGATGACAGAGATTACTTGGTGATTGAGCTAGGAATAGGATCACAAGGAGATCATAATCCCGAAAGAAGCATGTCAAGGGAGTTATCCAGATTCCCATCCAGAGTTCAGTCACAGAGGAAAACAGAACAGCAACACAAGGTTCAAAGCAAAAAAGCAAGGAAGTTTCAACACCTTTCAATCATGGGAGATGAATGCATCAATGTAAGAGAAAAAGACGAGCAGTTTGCAATCCAACAGCCGATCAGAAGGTCTTTCTCCATGGATTCAGCTGTAGATCGCGGCTTATACCTGCAAGTTCAAGAGATTATAAGGCAAAACAGACATGCTAGTGGTACTAGTACTCCTCGTGGAGAAAGTAGTGGCAATGGTGGAAGGATAAGAAGACCATCCTTCTTCTCATTCGGGCATGGGAGAGGATCTTCTAGGAGTTCTTCGATACTTCCCATCGATAACGATCAATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_150806.p1 GENE.R_Transcript_150806~~R_Transcript_150806.p1 ORF type:complete len:375 (+),score=52.38,zf-RING_2|PF13639.2|2.5e-14,zf-RING_11|PF17123.1|5.4e-12,zf-rbx1|PF12678.3|5e-09,zf-rbx1|PF12678.3|9.1e+03,zf-C3HC4|PF00097.21|9e-07,zf-C3HC4_2|PF13923.2|2.5e-06 R_Transcript_150806:73-1197(+)
MDSITKHYYHGHKPLFSLLIKTQQESTNIASQNPPNMHNSTSDFPIAIALLALMAVALLVVSYYIFVIKCCLNWHNLDPLRRFSISRRGGGTHPHHSDDSLMAFSPMVEVHRGLDEWLINNIPAFQYKGGDSNSNSCTISIAGERSFRGCAVCLNEFQEQDMLRVLPRCNHVFHLDCIDVWLLNNASCPLCRSSISGRTKYPIDHIVAPSSSPQDFSPFHGDDRDYLVIELGIGSQGDHNPERSMSRELSRFPSRVQSQRKTEQQHKVQSKKARKFQHLSIMGDECINVREKDEQFAIQQPIRRSFSMDSAVDRGLYLQVQEIIRQNRHASGTSTPRGESSGNGGRIRRPSFFSFGHGRGSSRSSSILPIDNDQ*

Click here to download the sequence:
Link to NCBI Protein BLAST