Transcript Information: R_Transcript_152261.p1


Annotated TAIR IDAT1G13040.1
Annotated Gene NamePentatricopeptide repeat (PPR-like) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:4447647-4449200 | Forward length=517
E-Value5.5E-204
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 13.2582060821283
Replicate 21.8135000359566
Replicate 33.0337138083196
Condition 2: 8 Hour
Replicate 12.9608627479394
Replicate 22.3176345862265
Replicate 33.6233541353556
Condition 3: 24 Hour
Replicate 13.1726720161127
Replicate 22.9632785457589
Replicate 34.0750621010154


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_152261.p1 GENE.R_Transcript_152261~~R_Transcript_152261.p1 ORF type:complete len:521 (+),score=64.96,PPR_2|PF13041.2|9.6e-05,PPR_2|PF13041.2|0.00037,PPR_2|PF13041.2|2.3e-05,PPR_2|PF13041.2|1.9e-15,PPR_2|PF13041.2|5.7e-14,PPR_2|PF13041.2|1.4,PPR_2|PF13041.2|9.3e-15,PPR_2|PF13041.2|6.7e-14,PPR_2|PF13041.2|0.0013,PPR_2|PF13041.2|8.5e-17,PPR_2|PF13041.2|4.4e-10,PPR_2|PF13041.2|1.9e-15,PPR_2|PF13041.2|1.5e-12,PPR_2|PF13041.2|0.0015,PPR_1|PF12854.3|0.025,PPR_1|PF12854.3|64,PPR_1|PF12854.3|0.00081,PPR_1|PF12854.3|2.8e-11,PPR_1|PF12854.3|0.039,PPR_1|PF12854.3|0.00035,PPR_1|PF12854.3|2.3e-05,PPR_1|PF12854.3|2.1e-09,PPR_1|PF12854.3|6.9e-08,PPR_1|PF12854.3|9.2e-07,PPR_1|PF12854.3|7.6e-06,PPR_1|PF12854.3|8.2e-10,PPR_1|PF12854.3|0.44,PPR|PF01535.16|3.3e-05,PPR|PF01535.16|3.5e+02,PPR|PF01535.16|0.36,PPR|PF01535.16|0.0021,PPR|PF01535.16|5.7e-08,PPR|PF01535.16|3.9,PPR|PF01535.16|4.1e-06,PPR|PF01535.16|0.00015,PPR|PF01535.16|0.00023,PPR|PF01535.16|1.4e-06,PPR|PF01535.16|0.0059,PPR|PF01535.16|3.6e-05,PPR|PF01535.16|8.7e-07,PPR|PF01535.16|0.045,PPR_3|PF13812.2|0.0008,PPR_3|PF13812.2|1.1e+03,PPR_3|PF13812.2|0.014,PPR_3|PF13812.2|1.4,PPR_3|PF13812.2|4.2e-05,PPR_3|PF13812.2|7.8e+02,PPR_3|PF13812.2|0.07,PPR_3|PF13812.2|0.028,PPR_3|PF13812.2|0.0076,PPR_3|PF13812.2|0.0013,PPR_3|PF13812.2|0.24,PPR_3|PF13812.2|0.0016,PPR_3|PF13812.2|0.0071,PPR_3|PF13812.2|7.4,RabGAP-TBC|PF00566.14|1.3,RabGAP-TBC|PF00566.14|0.041,RabGAP-TBC|PF00566.14|99,RabGAP-TBC|PF00566.14|0.09,DUF3368|PF11848.4|0.0043,DUF3368|PF11848.4|48,DUF3368|PF11848.4|2.8e+02,DUF3368|PF11848.4|4.6e+03 R_Transcript_152261:281-1843(+)
ATGCATGATATGATTTGCAGTTTTGGCAAACATCGATCTGTCTATCGAGCTCTTATATCAAGATTTGTTAAAAGAGGAATGATCGATCAAGCGATTGAAACTTTTGATGAGATGATTAGCTCAAATTGTCGAGTATTCAGCATAGATTATAATCGATTTATCGGAGTTCTCATCAAGCATTCCCATCTTGACTTAGCTCACTACTATTACAACACAATGCAACCACAAGGATTTTCTTTGATTTCTTTTACGTATTCGAGGTATATATCTGCTCTGTGTAAGGTGAAGAATTTTCAGCTTATTGAGGTTCTTCTAGAAGACATGGAAAAGCTCGATTCTGTCCCAGACATATGGGCATATAATATTTATCTGAATTTGTTATGCCAGGAGAATAAAATAGACTTAGCTTTGAGCCTATTAGAAAACATGATTCATAAGGGAAGGACTCCTGATGTTGTAACATATACTGTGCTTATAAGTGGACTGTGCAAGGCAAGACGTTTTGACAATGCTGTTGAGGTTTGGCATACTATGCTAAAGAATGGAATTAGTCCAGATACTAAAGCATGTAGGGCACTTGTTCTTGGTTTATGTGGTGCTGGTAAGGCTGATTTAGCTTATGAACTTGTAGTTGATATGATTAAAGTTGGAGCACAACTAGGCATATTGGTATATAATGCTCTGATTAGTGGGTTTTGTAAGATTGATCAGGTTGATAAAGCACTAGCTATTAAATCATACATGAAAAGTGATGGATGTGAGCTAGACCGTGTTACCTATAACATACTTTTGGGTTATTGTTGTGATCGACTTATGCTAACGGAAGCTGAGAAACTGATGGAAAAGATGGAAAGGAACGGAATGGAACCTGATTTATACAGCTATAACCAATTTCTTAAGGGTCTTTGTAGAGCTAACCGCTTGGACAAGGCTTATTTGTTGCTTGATGTAATGGAAGCCAAAGGATTGTGCGACACTGTCTCTTACAATACTATTATTAAGGGACTTTGCTATGCCCGACATACCAAAAGGGCTTACAAAGTTTTTGAGGAGATGTTTCGGAAAGGGATTGACCCAGACGTGGTGACATTTACCATCCTCGTAAAAGCTTTCCTTAGTGAAGGTAGCTCTGATATTGCAAAGAGACTTCTTGATCAGATGGAAGGAATGGGTATGTCTCCTGATCGTGTCTTATGTACCATAATTATTCATCACCTTTGTAAGATGGGCAAAATTGAGATGGCTCAAAATGTTTTTCATGACATGGTGGAGAGAGGGTTAACACCAGATGTTATATTATACAATGCCCTTATAAATGGTCTTTGCAAAACTTGTAGAATTAGTGAAGCAATGAGTTTGTACGAGAAAATGCAAAATGGAGGACCTTGTCCTGATGAATTGACTTTCAAACTGATAATTGGGGGGCTGATACGGGAGGACAAGCTATCAATGGCTTGTAGAGTGTGGGACCACATGATGGAAAAGGGCTTTACTTTAGATAGATCCGTTTCTGAAAGCCTAACTAGCGCCCTTCATTCAAAAGATGCCTCTTGGGAAAATTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_152261.p1 GENE.R_Transcript_152261~~R_Transcript_152261.p1 ORF type:complete len:521 (+),score=64.96,PPR_2|PF13041.2|9.6e-05,PPR_2|PF13041.2|0.00037,PPR_2|PF13041.2|2.3e-05,PPR_2|PF13041.2|1.9e-15,PPR_2|PF13041.2|5.7e-14,PPR_2|PF13041.2|1.4,PPR_2|PF13041.2|9.3e-15,PPR_2|PF13041.2|6.7e-14,PPR_2|PF13041.2|0.0013,PPR_2|PF13041.2|8.5e-17,PPR_2|PF13041.2|4.4e-10,PPR_2|PF13041.2|1.9e-15,PPR_2|PF13041.2|1.5e-12,PPR_2|PF13041.2|0.0015,PPR_1|PF12854.3|0.025,PPR_1|PF12854.3|64,PPR_1|PF12854.3|0.00081,PPR_1|PF12854.3|2.8e-11,PPR_1|PF12854.3|0.039,PPR_1|PF12854.3|0.00035,PPR_1|PF12854.3|2.3e-05,PPR_1|PF12854.3|2.1e-09,PPR_1|PF12854.3|6.9e-08,PPR_1|PF12854.3|9.2e-07,PPR_1|PF12854.3|7.6e-06,PPR_1|PF12854.3|8.2e-10,PPR_1|PF12854.3|0.44,PPR|PF01535.16|3.3e-05,PPR|PF01535.16|3.5e+02,PPR|PF01535.16|0.36,PPR|PF01535.16|0.0021,PPR|PF01535.16|5.7e-08,PPR|PF01535.16|3.9,PPR|PF01535.16|4.1e-06,PPR|PF01535.16|0.00015,PPR|PF01535.16|0.00023,PPR|PF01535.16|1.4e-06,PPR|PF01535.16|0.0059,PPR|PF01535.16|3.6e-05,PPR|PF01535.16|8.7e-07,PPR|PF01535.16|0.045,PPR_3|PF13812.2|0.0008,PPR_3|PF13812.2|1.1e+03,PPR_3|PF13812.2|0.014,PPR_3|PF13812.2|1.4,PPR_3|PF13812.2|4.2e-05,PPR_3|PF13812.2|7.8e+02,PPR_3|PF13812.2|0.07,PPR_3|PF13812.2|0.028,PPR_3|PF13812.2|0.0076,PPR_3|PF13812.2|0.0013,PPR_3|PF13812.2|0.24,PPR_3|PF13812.2|0.0016,PPR_3|PF13812.2|0.0071,PPR_3|PF13812.2|7.4,RabGAP-TBC|PF00566.14|1.3,RabGAP-TBC|PF00566.14|0.041,RabGAP-TBC|PF00566.14|99,RabGAP-TBC|PF00566.14|0.09,DUF3368|PF11848.4|0.0043,DUF3368|PF11848.4|48,DUF3368|PF11848.4|2.8e+02,DUF3368|PF11848.4|4.6e+03 R_Transcript_152261:281-1843(+)
MHDMICSFGKHRSVYRALISRFVKRGMIDQAIETFDEMISSNCRVFSIDYNRFIGVLIKHSHLDLAHYYYNTMQPQGFSLISFTYSRYISALCKVKNFQLIEVLLEDMEKLDSVPDIWAYNIYLNLLCQENKIDLALSLLENMIHKGRTPDVVTYTVLISGLCKARRFDNAVEVWHTMLKNGISPDTKACRALVLGLCGAGKADLAYELVVDMIKVGAQLGILVYNALISGFCKIDQVDKALAIKSYMKSDGCELDRVTYNILLGYCCDRLMLTEAEKLMEKMERNGMEPDLYSYNQFLKGLCRANRLDKAYLLLDVMEAKGLCDTVSYNTIIKGLCYARHTKRAYKVFEEMFRKGIDPDVVTFTILVKAFLSEGSSDIAKRLLDQMEGMGMSPDRVLCTIIIHHLCKMGKIEMAQNVFHDMVERGLTPDVILYNALINGLCKTCRISEAMSLYEKMQNGGPCPDELTFKLIIGGLIREDKLSMACRVWDHMMEKGFTLDRSVSESLTSALHSKDASWEN*

Click here to download the sequence:
Link to NCBI Protein BLAST