Transcript Information: R_Transcript_152302.p1


Annotated TAIR IDAT3G53920.1
Annotated Gene NameRNApolymerase sigma-subunit C
Annotated Gene Symbol(s)SIGC, SIG3
Annotation TypeOrtholog
Chromosome Positionchr3:19961041-19963820 | Reverse length=571
E-Value5.7E-131
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 13.6831867640772
Replicate 21.5747225312224
Replicate 32.5770079795672
Condition 2: 8 Hour
Replicate 12.6672102888963
Replicate 22.3958087686985
Replicate 32.8523959546322
Condition 3: 24 Hour
Replicate 12.869725903463
Replicate 22.2055258890577
Replicate 32.6968778989213


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_152302.p1 GENE.R_Transcript_152302~~R_Transcript_152302.p1 ORF type:complete len:560 (+),score=110.70,Sigma70_r4|PF04545.12|5.1e-16,Sigma70_r2|PF04542.10|7.7e-13,Sigma70_r3|PF04539.12|5.9e+03,Sigma70_r3|PF04539.12|7.5e+03,Sigma70_r3|PF04539.12|2.6e-06 R_Transcript_152302:225-1904(+)
ATGGGTTTGGGTTGCAAACTGAACATGATCAGATGGGGTGTTCCCTCAGTTCATTCTCCTTTTGCCACCACCAACTCCTCCTCTTCTCTTTGCTGCTCTCCTTCATTTAGAGGTAAAGAGCTTGATTTTGGGCCAGCACGATTGTCCCTTTTGGCTATTCGCTTTGATGAGAATGAAACACTGCATAAAGATTCGTCCAGACCACAGGCATGCTCATCGTCAACTGCACAAACTGTTGAAAATGACTACTCAAACATGGAGATGATAGTTGGGAAGAGAAACTGCAAAGGTTTGCATAATATGATCAATGATACTCAAATACCTTGTGACAAGGACACATCTGTGTTCGTTCGAAGTATACAAGCATGCAGTGGTTCCCACTTCCATCTAATAATGGAGAATATCAATGTACTGGAGAATCGGATTGCTGATCCAGACTTGGTGAAGCTTGAAAAAGATATTTTAGTGCATTTAGGAAGGCTTGGGGCACTTGATCTGTTTCATACATGCTTATCTAAGAGCCTTGCCGATCCTACTCTCACCAATATGTCAAATTCGCAAGCTGAGCCCACTGGAAATTGCCAATTGAAAGAGCAGATGGTTCCTAGTTCAGTTAAAAATATGGTTTGCTCTAAGAGGAAAGAGGAAAGGAAAAAAAGACAATATAGGAGGATGCAAATGTCCAGTAAGAAGTATGCCTCTATGCCGGAAAGTTCTGCTGAAGGTTCTGTGGAGCCTTCGGTTTCTTCTGCAGTAAAGAAGACTAAGACCGTGGGTAGAAGAGTGATGGTTGCCAATAATGAGGCAGAAATGTCCAAGGGAATTAAGGTAGTTGCAAATTTGGAAAGGGTGAAATCAAAAATGGAAAAGGAAACGGGGGGAGCAGTGAGTTTAAGTACTTGGGCTGAAGCAGCTGGCATTGATGACAAGGTTCTGCAGCACTACCTGCACTTTGGGTGGTACTGCAGGGATAAAATCCTCAAAAGTGGCCGCTCCTTAGTGGTGTACCTTGCAAGAAATTACCGGGGACTAGGAGTATCATATGAAGACTTAATTCAGGCAGGAAACATAGGGCTATTGCAAGGCGCTGAAAGGTTTGATGGCACAAGAGGGTACCAATTCTCAACATATGTTCAGTACTGGATTAGAAAAGCGATGTTTCAATTGGTATCTCGGCATGGAAGAGAAATTAAAGTTCCTTTGACATTGAGCACTGCTATAAACCGGGTACAGAGGGCACGAAAAGCCCTTAAAATAACTCATGGGAAACACCCAGATGATGTTGATCTGGCAAAGTTCACTGGTCTTTCATTGCAGAAAGTACAATCTGCAAACAAATGCTTGAGAGTTGTGGGCTCAACTAATCAGAAAATTGGAGATTGCATAAACATAAAATTCATGGAATGCACGCCAGACATATCAGTAGAGATGCCTGAAAAAATAGTGTTGAGGGATCACAGGCGAAAAGACATCAATAAGCTCCTGAAAGAGCTGGATCCAAAAGAGAGGCAGGTTCTGGTTCTAAGGTATGGATTTGAAGGACATTGCATGTCACTACATGAGATTGGGAGGATATTTGATGTAAGCAAGGAATGGATAAGAAGAATGGAGAAGAGAGCTCTGACAAAGCTGAAGGGTTTCGACAACCGGGAAAGTTTACGACATTACTTGGATCTATAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_152302.p1 GENE.R_Transcript_152302~~R_Transcript_152302.p1 ORF type:complete len:560 (+),score=110.70,Sigma70_r4|PF04545.12|5.1e-16,Sigma70_r2|PF04542.10|7.7e-13,Sigma70_r3|PF04539.12|5.9e+03,Sigma70_r3|PF04539.12|7.5e+03,Sigma70_r3|PF04539.12|2.6e-06 R_Transcript_152302:225-1904(+)
MGLGCKLNMIRWGVPSVHSPFATTNSSSSLCCSPSFRGKELDFGPARLSLLAIRFDENETLHKDSSRPQACSSSTAQTVENDYSNMEMIVGKRNCKGLHNMINDTQIPCDKDTSVFVRSIQACSGSHFHLIMENINVLENRIADPDLVKLEKDILVHLGRLGALDLFHTCLSKSLADPTLTNMSNSQAEPTGNCQLKEQMVPSSVKNMVCSKRKEERKKRQYRRMQMSSKKYASMPESSAEGSVEPSVSSAVKKTKTVGRRVMVANNEAEMSKGIKVVANLERVKSKMEKETGGAVSLSTWAEAAGIDDKVLQHYLHFGWYCRDKILKSGRSLVVYLARNYRGLGVSYEDLIQAGNIGLLQGAERFDGTRGYQFSTYVQYWIRKAMFQLVSRHGREIKVPLTLSTAINRVQRARKALKITHGKHPDDVDLAKFTGLSLQKVQSANKCLRVVGSTNQKIGDCINIKFMECTPDISVEMPEKIVLRDHRRKDINKLLKELDPKERQVLVLRYGFEGHCMSLHEIGRIFDVSKEWIRRMEKRALTKLKGFDNRESLRHYLDL*

Click here to download the sequence:
Link to NCBI Protein BLAST