Transcript Information: R_Transcript_1528.p1


Annotated TAIR IDAT1G05460.1
Annotated Gene NameP-loop containing nucleoside triphosphate hydrolases superfamily protein
Annotated Gene Symbol(s)SDE3
Annotation TypeOrtholog
Chromosome Positionchr1:1601357-1604658 | Reverse length=1002
E-Value4.2E-225
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.6802675007858
Replicate 20.93663793678653
Replicate 31.6605255878252
Condition 2: 8 Hour
Replicate 11.6384593644997
Replicate 21.8703339829988
Replicate 33.3401662665768
Condition 3: 24 Hour
Replicate 14.5232854389157
Replicate 23.6485465450955
Replicate 33.986979664156


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_1528.p1 GENE.R_Transcript_1528~~R_Transcript_1528.p1 ORF type:complete len:538 (+),score=86.41,AAA_11|PF13086.2|6.8e-18,AAA_19|PF13245.2|5.6e-10,AAA_30|PF13604.2|1.7e-06 R_Transcript_1528:178-1791(+)
ATGGAAGGACACAAATCAGATGATGAATATTCTGTTATCGGAGAAAAAGGGGAGATCGGATTCATAGATTTTGAAGATGATAAATCTGTATGTAGCTATAACCCATGCGAAGAGGGTGAGGTGATTATTTCTGTGCCTTTCCCGTTTGTTGAAGAAAAACCCCAGTCAATTTCTGTTAACGAGGTTGCAGCTGATTCTATCACTATAAGAAACACAACTAGAGAATCTGTGGAACTCTGGGGGATCCAGATCTATGCTTCAAATCCTGATGATTCATTTACTCTGTCATTGATGGAACCTTCTCAAAAAGGATTTGTAGGGTCCACCTCTTTGGAAGACCGAGTGCTGCAGCCACTTAAAACCTTGAAGATTTGGTTGTCTTGCAAGCCGAAAGATATTGGGCTTCACACTTGCATTGTGCATTTCGATGTTGGGAATGACAGGATTGAACGGATAGTCTTCCTTTTGGCAGAAGATAGTATCTCAAAATCTTTAGTTTCAAAGAAGCAACCTTATCAAAGGGGAAGGAGAAAGAACCAGTTTACCATAGATTCTTATGTTGCTGGTGTTCGACCAGCTAGGGCAACGAACCGCAGTTTCCGGTACAAGCTTCCTATGTATGAGATCCCGAAGGACATCAAAGAAGTAGTAGAGAGTAATCAGCTTCCAGATGTTCTAATTGAAGGTCTATCAAGAAAGAACTACGTTGATTACTTCAAAATGTTGCTAATTATGGAAGAACTGCGCTTGGAGGAAGACATGAGGGCTTATGATATGGAGGAAGTGAGAATGAGAAGCCGGGGTCGTCAGTATCTGACCCTTGAAGTTCTGGGATTGGCTGAGAGAAGACCGTCTCTTGTCCATGGAGATTCTGTCTTTGCCAGACTTGCTATCCAAAATTCTGGGGAGATTCCAGTGTATGAGGGTTGTATTCATCGTGTTGAGGCTGATCAAGTATATCTTAGATTTGATGATGACTTTCACTTGCGTCACAGAGATGAAAATTCTTATGACATACGGTTTATGTACAATCGTGTCAATATGAGAAGGTTGTATCAGGCCGTTGAAGCTGCCGAAGGATTACAGACAGACTTCCTCTTTCCATCTGAGACTATGGTGAAGAGACAGATTACACCATATCACATGGTGCCAATTTCATGTAATCTTAATGAGGAGCAACTGAATGCTGTTGAAATGATACTAGGATGCAAAGGGGGAGTCCCATATATAATTAATGGCCCCCCCGGTACTGGTAAAACCATGACACTTGTAGAAGCGATCCTCCAAGTTTATCGGGTCAGAAAAGACACTCGAATTCTGATTTGTGCATCCTCAAATTGCGCAGCAGATCATATACTGGAGAAAATACTGAATGAAAAAGGCCTACAGGTTCGGGAGAATGAGATTTTCAGGCTGAATGCAAGTAGTCGTCCTTATGAGGATATGAAGCCTGATTATATTAGGTTCTGTTTCTTTGAGCAATCTATTTTTAGGTGTCCTTCACTTAAGGCTCTCTTGCGCTACAGAATAGTTATAACAACATATATGAGTTCTTCCCTTCTTTATGCAGAAAGGTATCAGGTGGGGGCACTTCTCTCACATAATCCTGGATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_1528.p1 GENE.R_Transcript_1528~~R_Transcript_1528.p1 ORF type:complete len:538 (+),score=86.41,AAA_11|PF13086.2|6.8e-18,AAA_19|PF13245.2|5.6e-10,AAA_30|PF13604.2|1.7e-06 R_Transcript_1528:178-1791(+)
MEGHKSDDEYSVIGEKGEIGFIDFEDDKSVCSYNPCEEGEVIISVPFPFVEEKPQSISVNEVAADSITIRNTTRESVELWGIQIYASNPDDSFTLSLMEPSQKGFVGSTSLEDRVLQPLKTLKIWLSCKPKDIGLHTCIVHFDVGNDRIERIVFLLAEDSISKSLVSKKQPYQRGRRKNQFTIDSYVAGVRPARATNRSFRYKLPMYEIPKDIKEVVESNQLPDVLIEGLSRKNYVDYFKMLLIMEELRLEEDMRAYDMEEVRMRSRGRQYLTLEVLGLAERRPSLVHGDSVFARLAIQNSGEIPVYEGCIHRVEADQVYLRFDDDFHLRHRDENSYDIRFMYNRVNMRRLYQAVEAAEGLQTDFLFPSETMVKRQITPYHMVPISCNLNEEQLNAVEMILGCKGGVPYIINGPPGTGKTMTLVEAILQVYRVRKDTRILICASSNCAADHILEKILNEKGLQVRENEIFRLNASSRPYEDMKPDYIRFCFFEQSIFRCPSLKALLRYRIVITTYMSSSLLYAERYQVGALLSHNPG*

Click here to download the sequence:
Link to NCBI Protein BLAST