Transcript Information: R_Transcript_153068.p1


Annotated TAIR IDAT1G60900.1
Annotated Gene NameU2 snRNP auxilliary factor, large subunit, splicing factor
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:22424008-22427806 | Forward length=589
E-Value5.4E-199
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 145.869453827767
Replicate 238.447770892182
Replicate 343.284809353769
Condition 2: 8 Hour
Replicate 142.214267165543
Replicate 243.342358633727
Replicate 347.85424618102
Condition 3: 24 Hour
Replicate 157.24544139895
Replicate 245.829109383018
Replicate 351.521382785716


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_153068.p1 GENE.R_Transcript_153068~~R_Transcript_153068.p1 ORF type:5prime_partial len:308 (+),score=95.76,RRM_1|PF00076.18|0.00026,RRM_1|PF00076.18|1.4e-18,RRM_1|PF00076.18|0.013,RRM_5|PF13893.2|0.00021,RRM_5|PF13893.2|0.044,RRM_5|PF13893.2|0.18,RRM_6|PF14259.2|0.0019,RRM_6|PF14259.2|1.7e-05,RRM_6|PF14259.2|7.5e+02 R_Transcript_153068:2-925(+)
GGGGGCAATACTGCTGGACCAGGTGATGCTGTTGTCAATGTCTATATAAATCATGAAAAGAAGTTTGCTTTTGTGGAGATGAGGTCCGTGGAGGAGGCTAGCAATGCTATGGCATTGGATGGCATTATATTTGAGGGCACACCTGTCAAGGTGAGACGGCCTAGTGATTACAATCCATCCCTTGCTGCAACACTTGGTCCCAGCCAACCCAATCCAAATCTGAACCTTGCTGCTGTTGGGTTAACTCCTGGATCAGCTGGTGGACTTGAGGGCCCTGATCGTATTTTTGTTGGTGGGCTACCATATTATTTCACAGAAGCGCAGATCCGGGAGCTACTTGAATCTTTTGGGCCCCTTCGGGGATTTGATCTTGTGAAGGATAGAGAGACTGGAAACTCTAAAGGCTATGCCTTTTGTGTTTACCAAGATCCCTCTGTAACTGATGTAGCTTGTGCTGCTCTGAATGGAATTAAAATGGGTGATAAAACACTCACTGTCAGACGTGCTAATCAGGGAGCTGCGCAACCTAAGCCTGAGCAAGAGATTGTTCTACAACATGCACAACAACAAATAATGCTGCAGAAGCTCATGTTTCAACCTGGAGCACTTCCCACCAAGGTTGTGTGCTTAACACAAGTGGTTACTGCTGATGATCTTAGAGATGATGATGAGTATCAAGACATAATGGTTGACATGAAAGAGGAGGGTGAGAAATTTGGTTCTTTGATTAAGGTTGTCATCCCACGGCCAGGACCCAATGGAGAACTTGCCCCTGGAGTTGGAAAGGTGTTTTTGGAGTATGCTGATACAGATGGTTCTTCAAGAGCTCGAGCTGGAATGAATGGTAGGAAATTTGGTGGGAACCAAGTTGTGGCCGTGTTCTACCCTGAAAATAAATTTGCGGAGGGAGACTATGATGGATAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_153068.p1 GENE.R_Transcript_153068~~R_Transcript_153068.p1 ORF type:5prime_partial len:308 (+),score=95.76,RRM_1|PF00076.18|0.00026,RRM_1|PF00076.18|1.4e-18,RRM_1|PF00076.18|0.013,RRM_5|PF13893.2|0.00021,RRM_5|PF13893.2|0.044,RRM_5|PF13893.2|0.18,RRM_6|PF14259.2|0.0019,RRM_6|PF14259.2|1.7e-05,RRM_6|PF14259.2|7.5e+02 R_Transcript_153068:2-925(+)
GGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGTPVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDPSVTDVACAALNGIKMGDKTLTVRRANQGAAQPKPEQEIVLQHAQQQIMLQKLMFQPGALPTKVVCLTQVVTADDLRDDDEYQDIMVDMKEEGEKFGSLIKVVIPRPGPNGELAPGVGKVFLEYADTDGSSRARAGMNGRKFGGNQVVAVFYPENKFAEGDYDG*

Click here to download the sequence:
Link to NCBI Protein BLAST