Transcript Information: R_Transcript_153196.p1


Annotated TAIR IDAT1G31870.1
Annotated Gene Nameunknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2050, pre-mRNA-splicing factor (InterPro:IPR018609); Has 13303 Blast hits to 9618 proteins in 489 species: Archae - 8; Bacteria - 444; Metazoa - 7153; Fungi - 2294; Plants - 942; Viruses - 128; Other Eukaryotes - 2334 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:11437269-11439821 | Forward length=561
E-Value3E-07
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.64726811896166
Replicate 20.59563972812193
Replicate 30.81229565943803
Condition 2: 8 Hour
Replicate 10.86829308323565
Replicate 21.268702515812
Replicate 31.1586134438545
Condition 3: 24 Hour
Replicate 11.4653919507045
Replicate 20.93852165491818
Replicate 30.93139168880414


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_153196.p1 GENE.R_Transcript_153196~~R_Transcript_153196.p1 ORF type:internal len:141 (-),score=36.20 R_Transcript_153196:1-420(-)
TCGGGGCTGAACCATTCAGGTTCAGGTAGAGGAGAAGGTACTGATTTGTCACCACCACGGCCAAGTCGTAGACGGAATGATTTTCCTTCACCAGAGCCTTCTAGTTTTCAGAAGGAAGGTTCTGATCTGTCACCACCACGAAATCGTCGTAGGCGCCATGATTCTCCGTCTGAATTGAAGTCTAGGAATGTCGGTGAGGATGGTGATTTGTCAACACCTAGGCCACGTCGTAGGCGCTATGATTCTCCCTCGCCAGAACGTGGTGTTAGTGATGGTGATTTATTCCCTCCTCGTCGGCGAGGAAGAAGTTCTAATTCTCCATCTGTGCCAGAGAAAGGTACTTCAGCTTCTGGTGTGAAGGACCCTGATATGGACGACCTATCTCCTCCTCGGCGAGCGCGTCCTGATGCTTCAAGATCA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_153196.p1 GENE.R_Transcript_153196~~R_Transcript_153196.p1 ORF type:internal len:141 (-),score=36.20 R_Transcript_153196:1-420(-)
SGLNHSGSGRGEGTDLSPPRPSRRRNDFPSPEPSSFQKEGSDLSPPRNRRRRHDSPSELKSRNVGEDGDLSTPRPRRRRYDSPSPERGVSDGDLFPPRRRGRSSNSPSVPEKGTSASGVKDPDMDDLSPPRRARPDASRS

Click here to download the sequence:
Link to NCBI Protein BLAST