Transcript Information: R_Transcript_153209.p1


Annotated TAIR IDAT1G79080.1
Annotated Gene NamePentatricopeptide repeat (PPR) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:29747102-29748832 | Reverse length=576
E-Value1.1E-239
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.1852136354241
Replicate 21.6634392935447
Replicate 32.379397039037
Condition 2: 8 Hour
Replicate 12.2847726095141
Replicate 22.4014327329442
Replicate 33.9307184970204
Condition 3: 24 Hour
Replicate 12.5867951805864
Replicate 21.9803137384145
Replicate 31.9652692588587


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_153209.p1 GENE.R_Transcript_153209~~R_Transcript_153209.p1 ORF type:complete len:568 (+),score=87.57,PPR_2|PF13041.2|0.29,PPR_2|PF13041.2|2.5e-07,PPR_2|PF13041.2|2.1e-10,PPR_2|PF13041.2|1.6e-11,PPR_2|PF13041.2|3.2e-12,PPR_2|PF13041.2|8.1e-16,PPR_2|PF13041.2|3.8e-15,PPR_2|PF13041.2|8.1e-10,PPR_2|PF13041.2|6.1e-09,PPR_2|PF13041.2|2.7e+02,PPR_2|PF13041.2|8.7e-10,PPR_2|PF13041.2|0.45,PPR_2|PF13041.2|4e-11,PPR_1|PF12854.3|4.7e+03,PPR_1|PF12854.3|44,PPR_1|PF12854.3|1.7e-08,PPR_1|PF12854.3|3.7e-07,PPR_1|PF12854.3|0.0019,PPR_1|PF12854.3|8.8e-10,PPR_1|PF12854.3|3.3e-12,PPR_1|PF12854.3|1.4e-08,PPR_1|PF12854.3|3.6e-06,PPR_1|PF12854.3|0.4,PPR_1|PF12854.3|24,PPR_1|PF12854.3|5e-09,PPR_1|PF12854.3|0.26,PPR_1|PF12854.3|0.0072,PPR|PF01535.16|8.4e+02,PPR|PF01535.16|0.4,PPR|PF01535.16|0.0016,PPR|PF01535.16|0.00031,PPR|PF01535.16|0.3,PPR|PF01535.16|2.6e-06,PPR|PF01535.16|4.2e-06,PPR|PF01535.16|1.8e-07,PPR|PF01535.16|0.12,PPR|PF01535.16|2.9e+02,PPR|PF01535.16|0.91,PPR|PF01535.16|8.5e-06,PPR|PF01535.16|0.00076,PPR|PF01535.16|49,PPR_3|PF13812.2|9.5e+02,PPR_3|PF13812.2|39,PPR_3|PF13812.2|0.032,PPR_3|PF13812.2|0.014,PPR_3|PF13812.2|33,PPR_3|PF13812.2|0.099,PPR_3|PF13812.2|0.098,PPR_3|PF13812.2|8e-05,PPR_3|PF13812.2|0.52,PPR_3|PF13812.2|9.1e+03,PPR_3|PF13812.2|89,PPR_3|PF13812.2|0.11,PPR_3|PF13812.2|0.048,PPR_3|PF13812.2|1.8e+02 R_Transcript_153209:449-2152(+)
ATGGCAGTCCTTTTGCACTCTGTGACTCCTTTTCCAAGTCCATGTATAGAAAATACTAGAAAATCAAGTGGGTTCTTTTCCCATATTCCCAATTTCCACACTGTGTCACTGAACAAAGGTTTCTCAAGGGCTTTAGCATCTACCCAAATCAGTATATCATGTAATTCTGTATTTACTATGCCCAATTGGAGGGCTGGCAAGAATGACAGTAAAACTCGAGAAATCAAGGTCAACGATGCTTTCTTGTACTTAGAATATATGGTTGAGAAGGGCAATAAGCCGGATAAGAGTCAGGCAACTCAGCTTTTGTATGATCTTTGTAAGCTGAGTAAGTTTCGGAAAGCAATTCGAGTGATGGAGATGATGGTAAGCTCAGGTGTGAAGCCAGATGCTACATCCTATACATTCCTTGTTAACCATTTGTGTAAGAGAGGGAATGTTGGGTATGCAATGCAATTGGTTGAGAAGATGGAAGAGTATGGCTACCCAACCAATACAGTTACCTACAATTCACTTGTTAAAGGGCTTTGTATGATTGGGAACTTGAATAAGAGTCTGCAGCTTTTGGAGCAATTGACAAAGAAACGGCTTGAGCCTAATGTTTTTACTTACTCATTCTTGCTGGAGGCTGCATATAAAGAAAGAGGCGTCGATGAAGCAATGAGGTTACTTGATGAGATAATTGCCAAAGGTGGGAAACCCAATTTGGTAAGCTACAATGTGCTCTTAACAGGTCTGTGTAAGGAAGGGCGAACGCAGGAGGCAATCAGCCTATTTAGAAACTTGCCCTTGAAAGGATTTTATCCGAATGTGGTGACTTACAATATTTTGCTGAGGACTTTGTGCTGTGAAGGACGGTGGAAAGAGGCATACGAGCTTCTGGGTGAAATGGACAATGAAGAACGAGCCCCATCTATTGTTACCTACAACATCTTGATTAGTTCACTGGCTCTCCATGGTCAAATTCATCATGCCTTTGAGGTTTTGGAAGAAATGATGAGGGCTGGCTTCAAGCCGACGGGGGCAACTTTCAACCCTATTATCGCTCATCTCTGCAAAGAGGGTAAGGTAGGTCAAGTAATAAAGGTTCTAGATCAGATGATTTTTCAGCAATGCCATCCGAATGAGGGAACATATAATGCCATTGCTAAACTCTGTGATGATGGAAGAGTTCAAGAAGGATTCTCCATAATCCAACAATTAGGTAGTAAATCTAGTTTATCAGCTCATGACTTCAACAGAACTGTCCTCACTAGCTTGTGCAGGAAAAACAACACTTATCCCGCACTAATCTTACTGAATGAAATGATTAAGCATGGATTTGTTCCTGACTCCTATACTTATTCCTCTTTGTTAAGAGGACTGTGCTTGGAAGGAATGCTGGATGCCGCGATCACTATTTTCAAGTTAATGGAAGAAAATGACCGCAGACCTGATGTTGATAATTGCAATGCTTTGATACTTGGATTATGTAAGTCTCGTAGAACTGATTTGTCTTTGGATATATTTGGAATGATGGTAGAGAAAGGCTATAAGCCTAATGAGATGACTTACACCATTATAATAGAAGGCATAGCCCATGAAGAGGAAACAGAGCTAGCAGCAGAAGTTTTGGAAAAAGTATACAAGAGACAAGCAGTGAGCAGGAACACTGTGGAAAGACTTGTGATGCAATATGACCTCAAGGGTTTAGCCGCCAAGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_153209.p1 GENE.R_Transcript_153209~~R_Transcript_153209.p1 ORF type:complete len:568 (+),score=87.57,PPR_2|PF13041.2|0.29,PPR_2|PF13041.2|2.5e-07,PPR_2|PF13041.2|2.1e-10,PPR_2|PF13041.2|1.6e-11,PPR_2|PF13041.2|3.2e-12,PPR_2|PF13041.2|8.1e-16,PPR_2|PF13041.2|3.8e-15,PPR_2|PF13041.2|8.1e-10,PPR_2|PF13041.2|6.1e-09,PPR_2|PF13041.2|2.7e+02,PPR_2|PF13041.2|8.7e-10,PPR_2|PF13041.2|0.45,PPR_2|PF13041.2|4e-11,PPR_1|PF12854.3|4.7e+03,PPR_1|PF12854.3|44,PPR_1|PF12854.3|1.7e-08,PPR_1|PF12854.3|3.7e-07,PPR_1|PF12854.3|0.0019,PPR_1|PF12854.3|8.8e-10,PPR_1|PF12854.3|3.3e-12,PPR_1|PF12854.3|1.4e-08,PPR_1|PF12854.3|3.6e-06,PPR_1|PF12854.3|0.4,PPR_1|PF12854.3|24,PPR_1|PF12854.3|5e-09,PPR_1|PF12854.3|0.26,PPR_1|PF12854.3|0.0072,PPR|PF01535.16|8.4e+02,PPR|PF01535.16|0.4,PPR|PF01535.16|0.0016,PPR|PF01535.16|0.00031,PPR|PF01535.16|0.3,PPR|PF01535.16|2.6e-06,PPR|PF01535.16|4.2e-06,PPR|PF01535.16|1.8e-07,PPR|PF01535.16|0.12,PPR|PF01535.16|2.9e+02,PPR|PF01535.16|0.91,PPR|PF01535.16|8.5e-06,PPR|PF01535.16|0.00076,PPR|PF01535.16|49,PPR_3|PF13812.2|9.5e+02,PPR_3|PF13812.2|39,PPR_3|PF13812.2|0.032,PPR_3|PF13812.2|0.014,PPR_3|PF13812.2|33,PPR_3|PF13812.2|0.099,PPR_3|PF13812.2|0.098,PPR_3|PF13812.2|8e-05,PPR_3|PF13812.2|0.52,PPR_3|PF13812.2|9.1e+03,PPR_3|PF13812.2|89,PPR_3|PF13812.2|0.11,PPR_3|PF13812.2|0.048,PPR_3|PF13812.2|1.8e+02 R_Transcript_153209:449-2152(+)
MAVLLHSVTPFPSPCIENTRKSSGFFSHIPNFHTVSLNKGFSRALASTQISISCNSVFTMPNWRAGKNDSKTREIKVNDAFLYLEYMVEKGNKPDKSQATQLLYDLCKLSKFRKAIRVMEMMVSSGVKPDATSYTFLVNHLCKRGNVGYAMQLVEKMEEYGYPTNTVTYNSLVKGLCMIGNLNKSLQLLEQLTKKRLEPNVFTYSFLLEAAYKERGVDEAMRLLDEIIAKGGKPNLVSYNVLLTGLCKEGRTQEAISLFRNLPLKGFYPNVVTYNILLRTLCCEGRWKEAYELLGEMDNEERAPSIVTYNILISSLALHGQIHHAFEVLEEMMRAGFKPTGATFNPIIAHLCKEGKVGQVIKVLDQMIFQQCHPNEGTYNAIAKLCDDGRVQEGFSIIQQLGSKSSLSAHDFNRTVLTSLCRKNNTYPALILLNEMIKHGFVPDSYTYSSLLRGLCLEGMLDAAITIFKLMEENDRRPDVDNCNALILGLCKSRRTDLSLDIFGMMVEKGYKPNEMTYTIIIEGIAHEEETELAAEVLEKVYKRQAVSRNTVERLVMQYDLKGLAAK*

Click here to download the sequence:
Link to NCBI Protein BLAST