Transcript Information: R_Transcript_154471.p1


Annotated TAIR IDAT4G28200.1
Annotated Gene NameFUNCTIONS IN: molecular_function unknown; INVOLVED IN: RNA processing; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA-processing protein, HAT helix (InterPro:IPR003107), U3 small nucleolar RNA-associated protein 6 (InterPro:IPR013949); Has 492 Blast hits to 480 proteins in 206 species: Archae - 0; Bacteria - 2; Metazoa - 128; Fungi - 191; Plants - 60; Viruses - 0; Other Eukaryotes - 111 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr4:13987808-13990422 | Reverse length=648
E-Value4.9E-68
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.84616375286776
Replicate 20.2780966942556
Replicate 30.91020149388685
Condition 2: 8 Hour
Replicate 12.2702126441155
Replicate 21.3327677918587
Replicate 32.2839774952805
Condition 3: 24 Hour
Replicate 11.3683461261545
Replicate 20.58424526862456
Replicate 31.0146618066774


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_154471.p1 GENE.R_Transcript_154471~~R_Transcript_154471.p1 ORF type:internal len:151 (-),score=20.11,U3_assoc_6|PF08640.7|2.5e-28 R_Transcript_154471:2-451(-)
GACATTGTACGATACAGGCTAGAGCGAATGGTACCGGAGCTCGAAGACCTAGAACGAAGATCCCTATTCACCAAGAGAGAGATAAACGAGATTGTAAAAACTAGAACAAAATTCGAGTACCGACTGCAAAGACCAAGCCCATTAAAGCAAGATTTTTTGGATTACATTGAATATGAGAAGCAACTTGATAGACTTAGGGTTTTTAGAAAGAAAGCGGTTTCACGTGAGCTTAAGGAAAAGGGGAATAAGAAGTTGAAGAAATCAATATCGGATTTTTCTGGGGTTAAAAGGATTATTGAGATTTATAGAATGGCTACTAGTAGATTTAAGGGTGACCTTAAGCTTTGGTTTCAGTATTTGGAGTTTTGTAAGGAGAAGAAGAATGGCACCATGAAAAGGGCCTTGGCTCAGGTGATCAGGTTCCATCCAAAAAAAGCCTGCAGTATGGGT

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_154471.p1 GENE.R_Transcript_154471~~R_Transcript_154471.p1 ORF type:internal len:151 (-),score=20.11,U3_assoc_6|PF08640.7|2.5e-28 R_Transcript_154471:2-451(-)
DIVRYRLERMVPELEDLERRSLFTKREINEIVKTRTKFEYRLQRPSPLKQDFLDYIEYEKQLDRLRVFRKKAVSRELKEKGNKKLKKSISDFSGVKRIIEIYRMATSRFKGDLKLWFQYLEFCKEKKNGTMKRALAQVIRFHPKKACSMG

Click here to download the sequence:
Link to NCBI Protein BLAST