Transcript Information: R_Transcript_154806.p1


Annotated TAIR IDAT3G03580.1
Annotated Gene NameTetratricopeptide repeat (TPR)-like superfamily protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr3:860695-863343 | Reverse length=882
E-Value8E-97
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.52862067500889
Replicate 20.2861506019257
Replicate 30.39023403059885
Condition 2: 8 Hour
Replicate 10.45884925795519
Replicate 20.45712194564604
Replicate 30.49476281077716
Condition 3: 24 Hour
Replicate 10.31288323308626
Replicate 20.56359264626688
Replicate 30.67117322719617


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_154806.p1 GENE.R_Transcript_154806~~R_Transcript_154806.p1 ORF type:5prime_partial len:587 (+),score=135.23,PPR_2|PF13041.2|4.2e-06,PPR_2|PF13041.2|1.8e+03,PPR_2|PF13041.2|6e-09,PPR_2|PF13041.2|62,PPR_2|PF13041.2|0.004,PPR_2|PF13041.2|1.4,PPR_2|PF13041.2|4.4e-11,PPR_2|PF13041.2|0.0015,PPR_2|PF13041.2|1.8e-07,PPR_2|PF13041.2|0.44,PPR_2|PF13041.2|0.5,PPR_2|PF13041.2|7.6e+02,PPR_2|PF13041.2|9.6e+02,PPR|PF01535.16|0.0024,PPR|PF01535.16|4.1e-07,PPR|PF01535.16|0.4,PPR|PF01535.16|0.00028,PPR|PF01535.16|0.11,PPR|PF01535.16|8.7e-05,PPR|PF01535.16|5.1e+02,PPR|PF01535.16|0.0024,PPR|PF01535.16|2.3e-05,PPR|PF01535.16|0.081,PPR|PF01535.16|0.3,PPR|PF01535.16|23,PPR_1|PF12854.3|11,PPR_1|PF12854.3|0.044,PPR_1|PF12854.3|4.6,PPR_1|PF12854.3|0.54,PPR_1|PF12854.3|24,PPR_1|PF12854.3|2.6,PPR_1|PF12854.3|2.9e+02,PPR_1|PF12854.3|0.00016,PPR_1|PF12854.3|0.063,PPR_1|PF12854.3|4,PPR_1|PF12854.3|0.17,PPR_1|PF12854.3|4.4e+02,PPR_3|PF13812.2|0.94,PPR_3|PF13812.2|0.23,PPR_3|PF13812.2|1.2e+02,PPR_3|PF13812.2|1.3,PPR_3|PF13812.2|16,PPR_3|PF13812.2|0.18,PPR_3|PF13812.2|3.5e+02,PPR_3|PF13812.2|0.35,PPR_3|PF13812.2|3.4,PPR_3|PF13812.2|2.5,PPR_3|PF13812.2|0.19,PPR_3|PF13812.2|3.4e+03,PPR_3|PF13812.2|1.3e+02,TPR_19|PF14559.2|73,TPR_19|PF14559.2|2.2e+02,TPR_19|PF14559.2|8.5e+03,TPR_19|PF14559.2|3.7,TPR_19|PF14559.2|0.37,TPR_19|PF14559.2|1.6e+04,TPR_19|PF14559.2|4.3e+02,TPR_19|PF14559.2|1.5e+03 R_Transcript_154806:2-1762(+)
TTTTATAATGAAAACAAGGAGGACTTTTCTTGGACCTCAAAAATTTCTGGTTTAGTCAAACAGAATAAGCCAAATGATGCTATTAATTTGTTCAAAAGGATGCTTGTGAATGGTTGGAGGCCCAATTATGTCACTGTGTTGAGCATATTGCGTGCTATTGATGCTTTGAGATTGAAGAGTATGGCATATGGGGTTCATGGCTTGATAATCAAGATGGGATTTGAATTAGAAGTATCAGTTGTGACGGCGTTGATTGGTGTTTATGCTGGTTATGACATGTCGGTCTCATGGAAGCTTTTTGCTTATATGCCCTTTAAAGATTTGGTCATGTGGAGCGCTATGATTTCCATGTGTGTGAAGGATGGTGAATACATGGAAGCTATTGAGCTTTTTAGGAAGATGGTGTATGAAGGTATAGGGCCTAATGTTGTGAGTGTTGTAAGTATTTTGCCGGCTTGTGCAAAACTTCATGCTCTTCAGTTTGGGAAACAAGTGCATGGATTTGCTCTAAAAACAACATTTTATTTGCAAAATAATGTTCAAAACTCACTCATAGACATGTATGCAAAATGTGGGGATCTGAACTATTCATCCCGAGTTTTTGAGGGATTTCAGAGGAAAGATTTTGTGACTTGGAAGACATTGATTCGTGGATGTATTGAGAATGGTCATGCAGTTAAAGCTCTAGGCATCTTCACTGAGATGCAACTAGCTTGCTCTGAACTTGATGATGCCATTCTGTGTGACGTGATTGATGCATCTTCCAATGCAGAAGAGCTCATATTTGGACAGGGATTGCATTGCTTGACTTTAAAATCTGGCTCTATGGTATCAATTTCTGTTGGAACAGCCCTTATGCAAATGTATGCAAAGTTTGGCATGATGGGACAAGCTAGAGAATTGTTCAATCAGCTTCATCCAAAAGATCTTATTGCCTGGAGTGCCATGATATCTGCATATGCTCAAAGCAAATATTCCAGTGAGGCTTTTGATGCATTCAAGCAGATGCAATTAGCAAATGAGAAGCCTAATGAGATCACCTATGTTAGTTTATTACAAGCTTGTTCTTCATTGGGTACTCAAGAGGTTGGTGAAAGCATCCAGTGTTGTGTAACTAAAGCTGGTTACTTGCCTAACACATTTTTAGCTTCAGCTATAATTGATTTGTACTGTAAACTTGGGAGAGTAAAACAAGCAAGGGCTCTTTTTGATGAAATTCCCACCAAAGATCTAATATGCTGGAGTTCACTGATTAAAGGATGTGGATTAAATGGTCTTGGGGATGAGGCGTTGGAGACTTTCTCAAACATGTTGTTTTCTGGAATAATGCCCAATGATGTTGTTTTTGTATCTGTTTTATCTTCCTGCTGTCAATGTGGGTTGGAAGATGAAGGATGGTACTGGTTCTATCACATGCAAGATAAATATGGAATTAAGCCAAAGCTTGCACATTATGCTTGCATGGTTGACTTGCTTAGTCGTCGAGGGAAAGTTCAAGAGGCACTTGATTTTGTGAACAATATGGCTGTGCAACCTGACAAAAGAATATGGGGATCTCTTCTTGCTGGATGTAGATCAACTCATAGTTCAACTGAGGTAGCAGAACATGTGGTGAAGCAGTTTATTGGATTGGATCCAGATGAAACCAGTTATTATGTGATTTTGTCAAACTTGTATGCAAAGGAAGGCAGATGGGATGACGTTGAGAGGGTGAACATGTTGATAGATGAGAAAGAAAATGAGAAAGGTCACAGGATATAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_154806.p1 GENE.R_Transcript_154806~~R_Transcript_154806.p1 ORF type:5prime_partial len:587 (+),score=135.23,PPR_2|PF13041.2|4.2e-06,PPR_2|PF13041.2|1.8e+03,PPR_2|PF13041.2|6e-09,PPR_2|PF13041.2|62,PPR_2|PF13041.2|0.004,PPR_2|PF13041.2|1.4,PPR_2|PF13041.2|4.4e-11,PPR_2|PF13041.2|0.0015,PPR_2|PF13041.2|1.8e-07,PPR_2|PF13041.2|0.44,PPR_2|PF13041.2|0.5,PPR_2|PF13041.2|7.6e+02,PPR_2|PF13041.2|9.6e+02,PPR|PF01535.16|0.0024,PPR|PF01535.16|4.1e-07,PPR|PF01535.16|0.4,PPR|PF01535.16|0.00028,PPR|PF01535.16|0.11,PPR|PF01535.16|8.7e-05,PPR|PF01535.16|5.1e+02,PPR|PF01535.16|0.0024,PPR|PF01535.16|2.3e-05,PPR|PF01535.16|0.081,PPR|PF01535.16|0.3,PPR|PF01535.16|23,PPR_1|PF12854.3|11,PPR_1|PF12854.3|0.044,PPR_1|PF12854.3|4.6,PPR_1|PF12854.3|0.54,PPR_1|PF12854.3|24,PPR_1|PF12854.3|2.6,PPR_1|PF12854.3|2.9e+02,PPR_1|PF12854.3|0.00016,PPR_1|PF12854.3|0.063,PPR_1|PF12854.3|4,PPR_1|PF12854.3|0.17,PPR_1|PF12854.3|4.4e+02,PPR_3|PF13812.2|0.94,PPR_3|PF13812.2|0.23,PPR_3|PF13812.2|1.2e+02,PPR_3|PF13812.2|1.3,PPR_3|PF13812.2|16,PPR_3|PF13812.2|0.18,PPR_3|PF13812.2|3.5e+02,PPR_3|PF13812.2|0.35,PPR_3|PF13812.2|3.4,PPR_3|PF13812.2|2.5,PPR_3|PF13812.2|0.19,PPR_3|PF13812.2|3.4e+03,PPR_3|PF13812.2|1.3e+02,TPR_19|PF14559.2|73,TPR_19|PF14559.2|2.2e+02,TPR_19|PF14559.2|8.5e+03,TPR_19|PF14559.2|3.7,TPR_19|PF14559.2|0.37,TPR_19|PF14559.2|1.6e+04,TPR_19|PF14559.2|4.3e+02,TPR_19|PF14559.2|1.5e+03 R_Transcript_154806:2-1762(+)
FYNENKEDFSWTSKISGLVKQNKPNDAINLFKRMLVNGWRPNYVTVLSILRAIDALRLKSMAYGVHGLIIKMGFELEVSVVTALIGVYAGYDMSVSWKLFAYMPFKDLVMWSAMISMCVKDGEYMEAIELFRKMVYEGIGPNVVSVVSILPACAKLHALQFGKQVHGFALKTTFYLQNNVQNSLIDMYAKCGDLNYSSRVFEGFQRKDFVTWKTLIRGCIENGHAVKALGIFTEMQLACSELDDAILCDVIDASSNAEELIFGQGLHCLTLKSGSMVSISVGTALMQMYAKFGMMGQARELFNQLHPKDLIAWSAMISAYAQSKYSSEAFDAFKQMQLANEKPNEITYVSLLQACSSLGTQEVGESIQCCVTKAGYLPNTFLASAIIDLYCKLGRVKQARALFDEIPTKDLICWSSLIKGCGLNGLGDEALETFSNMLFSGIMPNDVVFVSVLSSCCQCGLEDEGWYWFYHMQDKYGIKPKLAHYACMVDLLSRRGKVQEALDFVNNMAVQPDKRIWGSLLAGCRSTHSSTEVAEHVVKQFIGLDPDETSYYVILSNLYAKEGRWDDVERVNMLIDEKENEKGHRI*

Click here to download the sequence:
Link to NCBI Protein BLAST