Transcript Information: R_Transcript_154821.p2


Annotated TAIR IDAT3G28730.1
Annotated Gene Namehigh mobility group
Annotated Gene Symbol(s)ATHMG, SSRP1, NFD, HMG
Annotation TypeHomolog
Chromosome Positionchr3:10784954-10788498 | Forward length=646
E-Value3E-11
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.5468610978575
Replicate 20.71173899716265
Replicate 30.19412489488265
Condition 2: 8 Hour
Replicate 10
Replicate 20.18949899865411
Replicate 30
Condition 3: 24 Hour
Replicate 10
Replicate 20
Replicate 30


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_154821.p2 GENE.R_Transcript_154821~~R_Transcript_154821.p2 ORF type:complete len:118 (+),score=60.14,HMG_box|PF00505.15|1e+04,HMG_box|PF00505.15|4.9e-23,HMG_box_2|PF09011.6|1.3e+04,HMG_box_2|PF09011.6|1.8e-17 R_Transcript_154821:21-374(+)
ATGCCAAAGAAAGCAGCAGCAAAAGATACCAAGAAGAAGAAAACCACCACCAAGAAGAAAAAAGATCCAAATGCACCAAAGAGAGCACTCTCTGCATACATGTACTACACCATGGAGCAAAGACCAGTTTTGAAGGAGAAGGAACCTTCCCTCAAGTTCGGAGAAATCGCAAAGAAGTTGTCCACCATGTGGAAGTCTTTGGATGAAGACGAGAAGGCACCATACCAAGAAAAGGCAAAGGAAGATAAGGAGAGATACACCAAGGAGAAGGAAGAATACGAAAAGAAGAAAGAAGAGGCAGGAGATGATGACGAAGAAGGAGATGGAGATGAGGATGAGGAAGATGATGAGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_154821.p2 GENE.R_Transcript_154821~~R_Transcript_154821.p2 ORF type:complete len:118 (+),score=60.14,HMG_box|PF00505.15|1e+04,HMG_box|PF00505.15|4.9e-23,HMG_box_2|PF09011.6|1.3e+04,HMG_box_2|PF09011.6|1.8e-17 R_Transcript_154821:21-374(+)
MPKKAAAKDTKKKKTTTKKKKDPNAPKRALSAYMYYTMEQRPVLKEKEPSLKFGEIAKKLSTMWKSLDEDEKAPYQEKAKEDKERYTKEKEEYEKKKEEAGDDDEEGDGDEDEEDDE*

Click here to download the sequence:
Link to NCBI Protein BLAST