Transcript Information: R_Transcript_155055.p1


Annotated TAIR IDAT1G60360.1
Annotated Gene NameRING/U-box superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:22242748-22243731 | Reverse length=327
E-Value5E-83
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.9556743880056
Replicate 21.2113250240172
Replicate 31.6991261403739
Condition 2: 8 Hour
Replicate 10.67268859745179
Replicate 20.36858596441515
Replicate 30.44880355929528
Condition 3: 24 Hour
Replicate 12.5228359590884
Replicate 21.0906446704132
Replicate 30.66144162515349


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_155055.p1 GENE.R_Transcript_155055~~R_Transcript_155055.p1 ORF type:5prime_partial len:364 (+),score=56.44,zinc_ribbon_9|PF14369.2|1.4e-12,zinc_ribbon_9|PF14369.2|80,zinc_ribbon_9|PF14369.2|2.6e+03,zinc_ribbon_9|PF14369.2|2.8e+03,zf-RING_2|PF13639.2|3.1e+02,zf-RING_2|PF13639.2|3.2e-12,zf-RING_2|PF13639.2|5.2e+03,zf-RING_11|PF17123.1|4.4e-08,zf-RING_11|PF17123.1|9.2e+03,zf-C3HC4|PF00097.21|45,zf-C3HC4|PF00097.21|1.4e-06,zf-C3HC4|PF00097.21|8e+03,zf-rbx1|PF12678.3|3.1e+03,zf-rbx1|PF12678.3|5.6e-06,zf-C3HC4_2|PF13923.2|5.2e+02,zf-C3HC4_2|PF13923.2|7e-06 R_Transcript_155055:2-1093(+)
AACATTTCTTACCAACAGAATCTCATGTCTTTGAGCCCACCTCGTACGAGACCCAACCAGACTTCTAACTATAACCTTTATTGGTGCTACCAATGCCGACGGGCTATCCGGATTTCGTCTGACAACCCGTCGGAGGTTGTTTGTCCTCGTTGTTATGGTCATTTTGTTAGTGAGATGGAAGTCCCACGTCCTAGATTGGTTGTGGATTACACTGACTTTGACCCTTCTCCTGAGGCCCGCCTTTTGGAAGCCTTGGCACTCATGCTCGAACCTCCATTGAGGATTAGGGCCCGTGAATCTGATGGTTCATGGGCTTTGCCTCGTGGGGGCTCTCGACGAAATATTGTGGTTCATGGACCTATTGAATCAGGCCGTGATAGATGGGCTCGTGTCCCAAGGCCCACACATCATAGGGATGATTGGGAAGTTGAGCCAGGGATTCGAGCCCCAAGAAGATCTTGGATTATAATCAGGCCAGTGGGCCAGCCTCCAGCTGGAATGGGGCCAATGGGCCCCATTTCCAGGCCTGGGGGACTAATCCCAAATGGGGTTGACTCTAGAAATTACTTCCTTGGGTCAGGCCTGCAGGAGTTGATAGATGAGCTGACTGAGAATGATCGGCAGGGGCCACCACCAGCACCAGACTCAGCAATCGAGGCAGTGCCAACAGTGAAGGTGACGGAGCAACATATGGCAGAAGAGGGCCCACAGTGTCCTGTATGCAAGGAGGATTTTGAGATAGGAACTGAGGCTAGGGAATTGCCCTGTAAACATGTGTACCATTCTCAATGTATTGTGCCTTGGCTAAGGCTTCATAATTCTTGCCCAGTTTGTAGAACTGAGCTACCAGCTGTTCAGTGTGAGAATGAAAGAGCTGAATCTGATGGTTCGAGCATCGAAGATGGTAGGCACCGGAGGTGCCTGAATTGGAACAGATTGGCTTCAATCTGGCCCTTTCGTTCGAGGTATCGAAGGATAAGTCCCCACGATGAATCTGCAAGGACTAATTCAACTGGAGCCTTTATCTTGACATGCGCTTTTTGCCTGATACTTATCATACCACTAGTGGCATATTCTCAATCTTCAGCCTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_155055.p1 GENE.R_Transcript_155055~~R_Transcript_155055.p1 ORF type:5prime_partial len:364 (+),score=56.44,zinc_ribbon_9|PF14369.2|1.4e-12,zinc_ribbon_9|PF14369.2|80,zinc_ribbon_9|PF14369.2|2.6e+03,zinc_ribbon_9|PF14369.2|2.8e+03,zf-RING_2|PF13639.2|3.1e+02,zf-RING_2|PF13639.2|3.2e-12,zf-RING_2|PF13639.2|5.2e+03,zf-RING_11|PF17123.1|4.4e-08,zf-RING_11|PF17123.1|9.2e+03,zf-C3HC4|PF00097.21|45,zf-C3HC4|PF00097.21|1.4e-06,zf-C3HC4|PF00097.21|8e+03,zf-rbx1|PF12678.3|3.1e+03,zf-rbx1|PF12678.3|5.6e-06,zf-C3HC4_2|PF13923.2|5.2e+02,zf-C3HC4_2|PF13923.2|7e-06 R_Transcript_155055:2-1093(+)
NISYQQNLMSLSPPRTRPNQTSNYNLYWCYQCRRAIRISSDNPSEVVCPRCYGHFVSEMEVPRPRLVVDYTDFDPSPEARLLEALALMLEPPLRIRARESDGSWALPRGGSRRNIVVHGPIESGRDRWARVPRPTHHRDDWEVEPGIRAPRRSWIIIRPVGQPPAGMGPMGPISRPGGLIPNGVDSRNYFLGSGLQELIDELTENDRQGPPPAPDSAIEAVPTVKVTEQHMAEEGPQCPVCKEDFEIGTEARELPCKHVYHSQCIVPWLRLHNSCPVCRTELPAVQCENERAESDGSSIEDGRHRRCLNWNRLASIWPFRSRYRRISPHDESARTNSTGAFILTCAFCLILIIPLVAYSQSSA*

Click here to download the sequence:
Link to NCBI Protein BLAST