Transcript Information: R_Transcript_155059.p1


Annotated TAIR IDAT1G60360.1
Annotated Gene NameRING/U-box superfamily protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:22242748-22243731 | Reverse length=327
E-Value3E-60
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10
Replicate 20.88638735266694
Replicate 30.48351952709557
Condition 2: 8 Hour
Replicate 11.0337040610974
Replicate 21.297993141177
Replicate 31.1973357929015
Condition 3: 24 Hour
Replicate 10.60574689255156
Replicate 20.58193295225798
Replicate 31.2705263934347


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_155059.p1 GENE.R_Transcript_155059~~R_Transcript_155059.p1 ORF type:5prime_partial len:379 (+),score=61.07,zinc_ribbon_9|PF14369.2|1.5e-12,zinc_ribbon_9|PF14369.2|84,zinc_ribbon_9|PF14369.2|2.7e+03,zinc_ribbon_9|PF14369.2|6.2e+03,zf-RING_2|PF13639.2|3.2e+02,zf-RING_2|PF13639.2|3.4e-12,zf-RING_2|PF13639.2|6e+03,zf-RING_11|PF17123.1|4.6e-08,zf-RING_11|PF17123.1|9.6e+03,zf-C3HC4|PF00097.21|47,zf-C3HC4|PF00097.21|1.5e-06,zf-rbx1|PF12678.3|3.4e+03,zf-rbx1|PF12678.3|5.1e-06,zf-C3HC4_2|PF13923.2|5.5e+02,zf-C3HC4_2|PF13923.2|7.4e-06 R_Transcript_155059:2-1138(+)
AACATTTCTTACCAACAGAATCTCATGTCTTTGAGCCCACCTCGTACGAGACCCAACCAGACTTCTAACTATAACCTTTATTGGTGCTACCAATGCCGACGGGCTATCCGGATTTCGTCTGACAACCCGTCGGAGGTTGTTTGTCCTCGTTGTTATGGTCATTTTGTTAGTGAGATGGAAGTCCCACGTCCTAGATTGGTTGTGGATTACACTGACTTTGACCCTTCTCCTGAGGCCCGCCTTTTGGAAGCCTTGGCACTCATGCTCGAACCTCCATTGAGGATTAGGGCCCGTGAATCTGATGGTTCATGGGCTTTGCCTCGTGGGGGCTCTCGACGAAATATTGTGGTTCATGGACCTATTGAATCAGGCCGTGATAGATGGGCTCGTGTCCCAAGGCCCACACATCATAGGGATGATTGGGAAGTTGAGCCAGGGATTCGAGCCCCAAGAAGATCTTGGATTATAATCAGGCCAGTGGGCCAGCCTCCAGCTGGAATGGGGCCAATGGGCCCCATTTCCAGGCCTGGGGGACTAATCCCAAATGGGGTTGACTCTAGAAATTACTTCCTTGGGTCAGGCCTGCAGGAGTTGATAGATGAGCTGACTGAGAATGATCGGCAGGGGCCACCACCAGCACCAGACTCAGCAATCGAGGCAGTGCCAACAGTGAAGGTGACGGAGCAACATATGGCAGAAGAGGGCCCACAGTGTCCTGTATGCAAGGAGGATTTTGAGATAGGAACTGAGGCTAGGGAATTGCCCTGTAAACATGTGTACCATTCTCAATGTATTGTGCCTTGGCTAAGGCTTCATAATTCTTGCCCAGTTTGTAGAACTGAGCTACCAGCTGTTCAGTGTGAGAATGAAAGAGCTGAATCTGATGGTTCGAGCATCGAAGATGGTAGGCACCGGAGGTGCCTGAATTGGAACAGATTGGCTTCAATCTGGCCCTTTCGTTCGAGGTATCGAAGGATAAGTCCCCACGATGAATCTGCAAGGACTAATTCAACTGGAGGACTATTCCTAGGCGACCCTAACAGATTCAAGGCGCAACAGCGAGATGGTGACAGGATGACAAGGATTAATGCATTCCAAGTTTTTACCTGCAATTACAGATTTGTGCAACAGCTGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_155059.p1 GENE.R_Transcript_155059~~R_Transcript_155059.p1 ORF type:5prime_partial len:379 (+),score=61.07,zinc_ribbon_9|PF14369.2|1.5e-12,zinc_ribbon_9|PF14369.2|84,zinc_ribbon_9|PF14369.2|2.7e+03,zinc_ribbon_9|PF14369.2|6.2e+03,zf-RING_2|PF13639.2|3.2e+02,zf-RING_2|PF13639.2|3.4e-12,zf-RING_2|PF13639.2|6e+03,zf-RING_11|PF17123.1|4.6e-08,zf-RING_11|PF17123.1|9.6e+03,zf-C3HC4|PF00097.21|47,zf-C3HC4|PF00097.21|1.5e-06,zf-rbx1|PF12678.3|3.4e+03,zf-rbx1|PF12678.3|5.1e-06,zf-C3HC4_2|PF13923.2|5.5e+02,zf-C3HC4_2|PF13923.2|7.4e-06 R_Transcript_155059:2-1138(+)
NISYQQNLMSLSPPRTRPNQTSNYNLYWCYQCRRAIRISSDNPSEVVCPRCYGHFVSEMEVPRPRLVVDYTDFDPSPEARLLEALALMLEPPLRIRARESDGSWALPRGGSRRNIVVHGPIESGRDRWARVPRPTHHRDDWEVEPGIRAPRRSWIIIRPVGQPPAGMGPMGPISRPGGLIPNGVDSRNYFLGSGLQELIDELTENDRQGPPPAPDSAIEAVPTVKVTEQHMAEEGPQCPVCKEDFEIGTEARELPCKHVYHSQCIVPWLRLHNSCPVCRTELPAVQCENERAESDGSSIEDGRHRRCLNWNRLASIWPFRSRYRRISPHDESARTNSTGGLFLGDPNRFKAQQRDGDRMTRINAFQVFTCNYRFVQQL*

Click here to download the sequence:
Link to NCBI Protein BLAST