Transcript Information: R_Transcript_155725.p4


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value9E-08
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.47616419881875
Replicate 20.54772957607734
Replicate 30.39837804515048
Condition 2: 8 Hour
Replicate 10.42584112951731
Replicate 20.58332735237875
Replicate 30.63136036940476
Condition 3: 24 Hour
Replicate 10.99816553163931
Replicate 20
Replicate 30.38065573368517


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_155725.p4 GENE.R_Transcript_155725~~R_Transcript_155725.p4 ORF type:complete len:115 (+),score=21.02,UBN2_3|PF14244.2|1.1e-24 R_Transcript_155725:909-1253(+)
ATGGGTGACGACGGGAAGAAGGATCAGAATCAAGGAATGTACATCAACTCCGATTTGTCCTCTCCATATTACCTTCATCCTTCAGATGGGCCAGGTTTGATTTTGACTGACATTAAATTAAATGGAAAAAATTATGCTGATTGGGAAACCTCTGTTTTAATTGGTTTGGAATCAAAAAATAAAGTTGGCTTCGTTGATGGTTCGGTTCAAAAACCAAAGGAAGATGCTAAAAATTTTGGGGCTTGGAAAATTGTCAATTCCATGTTACTTGCTTGGATTCTTAGAACCCTAGATAGTAGTGTTTATGCTAGTGTTCGTAGCATAAAAGATGTGAAAGTCTTATAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_155725.p4 GENE.R_Transcript_155725~~R_Transcript_155725.p4 ORF type:complete len:115 (+),score=21.02,UBN2_3|PF14244.2|1.1e-24 R_Transcript_155725:909-1253(+)
MGDDGKKDQNQGMYINSDLSSPYYLHPSDGPGLILTDIKLNGKNYADWETSVLIGLESKNKVGFVDGSVQKPKEDAKNFGAWKIVNSMLLAWILRTLDSSVYASVRSIKDVKVL*

Click here to download the sequence:
Link to NCBI Protein BLAST