Transcript Information: R_Transcript_156533.p1


Annotated TAIR IDAT5G18810.1
Annotated Gene NameSC35-like splicing factor 28
Annotated Gene Symbol(s)SCL28, At-SCL28
Annotation TypeHomolog
Chromosome Positionchr5:6268925-6271158 | Reverse length=236
E-Value7E-36
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.7203932192129
Replicate 21.4132125280201
Replicate 32.3126994688423
Condition 2: 8 Hour
Replicate 11.4715063069258
Replicate 23.0638708292009
Replicate 33.2288922738188
Condition 3: 24 Hour
Replicate 14.1942147819844
Replicate 21.908628173223
Replicate 34.2091739782495


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_156533.p1 GENE.R_Transcript_156533~~R_Transcript_156533.p1 ORF type:5prime_partial len:416 (+),score=53.56,RRM_1|PF00076.18|6.9e-18,RRM_6|PF14259.2|3.7e-14,RRM_5|PF13893.2|4.3e-06 R_Transcript_156533:2-1249(+)
TATAATTTGCGCCCAAATCCGCGATTTGCTTATCTGCTGCCAAGTCTCTCAGCACTCCTGGATATATACTCTTCTCCCCTCCCTCCAAAATTTGAAGCCCATTTCACTTCCACCAGGACCACCACCCTCTCCTCCCCACTGTCCCAAAACACTTCAATCCTCCAAACCCAATTAGGGTTTCGCATTCCAGCCAGGGTTAGGGTTCGCCGAAAATCCCTAGAGAAACTCCGAGAGATCAAGAATAGAGAAAAGATGGGGAGATACCGAAGCCAAAGCAGGAGTTACAGCCCGAGGCGAGGAAGGAGCCGTACACCACCTCGTCCTCGTCGTAAGCGCTACGATGACCCTCATGATCATCATCGATACCGCTCTTCTTCTTACCGCGGCCGCCGTTCTCCCGCTCCTTCTGGTCTTCTCGTTCGTAATGTCGCCCTTGATACCAGGCCTGAAGATCTGAGGATCCCCTTTGAGAAGTTTGGTGCAGTGAAGGACGTTTATTTGCCTAGAAACTACTATACTGGGGAGCCACGAGGCTTTGGATTTGTGAAATTTCGGCATCCTGATGATGCAGCTGAAGCAAAGGAACGACTGGATCACACAATAATTGGTGGGCGGGAGATACGAATAGTATATGCTGAGGAGAATCGCAAAACTCCTCAAGAAATGCGCAGGACTTCACATACAAGTGGGCCTAGTGGCAGATATGGAGGGAGAAGGAGGACTCCACCAAGGTCGCCGAGGCGCCGATATCGTTCCTACTCAAGGTCACTGTCTTCTGTAAGGCATCGTTCAAGGTCTGTTTCTAGGTCCCTTTCCCCTCGCAGCGATAGAGATTACCAGTCAAACAAGAGGTCCCCCAGCCCACGGGAAAGCTCTCCTTGTGATGAAAGAGGATACAGGAAAAGGGAGAGGTCTCAAAGTCCAAGGAAGACTTCAGCAGGTGAGGAAAAGGAATACAAGTCTAGGAGGTCTTACAGTCCAAGAGAGTTGTCCCTTCATGATGGGAACTACAGGTCATCTAGGAGGTCTATTAGTCCAATTGAGGAATCTCCAAATGGCATGGGCAGCAAGGCCAAACAGAGGTTGCTACTTCAAGCGAAGTTTCTCCACATGATGATTACTATAAGTCAAAGAGGTCTCCTAGTCCTGAAAAGTTTTCTAAGCATGGAGTTAAGAGAGGTGCCTTGTGCCAATTCACACCTAGTCCGAGGCGGCTCTCCCCGATTGACAAGAAGGGCGACAGGTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_156533.p1 GENE.R_Transcript_156533~~R_Transcript_156533.p1 ORF type:5prime_partial len:416 (+),score=53.56,RRM_1|PF00076.18|6.9e-18,RRM_6|PF14259.2|3.7e-14,RRM_5|PF13893.2|4.3e-06 R_Transcript_156533:2-1249(+)
YNLRPNPRFAYLLPSLSALLDIYSSPLPPKFEAHFTSTRTTTLSSPLSQNTSILQTQLGFRIPARVRVRRKSLEKLREIKNREKMGRYRSQSRSYSPRRGRSRTPPRPRRKRYDDPHDHHRYRSSSYRGRRSPAPSGLLVRNVALDTRPEDLRIPFEKFGAVKDVYLPRNYYTGEPRGFGFVKFRHPDDAAEAKERLDHTIIGGREIRIVYAEENRKTPQEMRRTSHTSGPSGRYGGRRRTPPRSPRRRYRSYSRSLSSVRHRSRSVSRSLSPRSDRDYQSNKRSPSPRESSPCDERGYRKRERSQSPRKTSAGEEKEYKSRRSYSPRELSLHDGNYRSSRRSISPIEESPNGMGSKAKQRLLLQAKFLHMMITISQRGLLVLKSFLSMELREVPCANSHLVRGGSPRLTRRATG*

Click here to download the sequence:
Link to NCBI Protein BLAST