Transcript Information: R_Transcript_156665.p1


Annotated TAIR IDAT4G01400.1
Annotated Gene NameFUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: COG4 transport (InterPro:IPR013167), Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G46100.1); Has 26268 Blast hits to 8959 proteins in 289 species: Archae - 0; Bacteria - 3; Metazoa - 247; Fungi - 222; Plants - 25350; Viruses - 0; Other Eukaryotes - 446 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr4:573098-577243 | Reverse length=1110
E-Value4E-79
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.7076574697762
Replicate 20.39286216995152
Replicate 30.66672417119778
Condition 2: 8 Hour
Replicate 10.61087396957784
Replicate 20.65083647770603
Replicate 31.0566426140766
Condition 3: 24 Hour
Replicate 11.0977745659817
Replicate 21.0087644399017
Replicate 31.4561466735566


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_156665.p1 GENE.R_Transcript_156665~~R_Transcript_156665.p1 ORF type:5prime_partial len:481 (+),score=61.37,PPR_2|PF13041.2|2.5e+03,PPR_2|PF13041.2|6.9,PPR_2|PF13041.2|0.00023,PPR_2|PF13041.2|3.8e-15,PPR_2|PF13041.2|6.6e-13,PPR_2|PF13041.2|3.1e-10,PPR_2|PF13041.2|2.5e-12,PPR_2|PF13041.2|0.021,PPR_2|PF13041.2|0.0084,PPR_1|PF12854.3|2.7e-08,PPR_1|PF12854.3|2.1e-05,PPR_1|PF12854.3|8.9e-10,PPR_1|PF12854.3|9.7e-09,PPR_1|PF12854.3|0.0069,PPR_1|PF12854.3|0.00071,PPR|PF01535.16|73,PPR|PF01535.16|0.91,PPR|PF01535.16|3e-06,PPR|PF01535.16|0.00011,PPR|PF01535.16|2.1e-07,PPR|PF01535.16|2e-05,PPR|PF01535.16|0.011,PPR|PF01535.16|0.008,PPR_3|PF13812.2|1.6,PPR_3|PF13812.2|3.4,PPR_3|PF13812.2|8.2e+02,PPR_3|PF13812.2|0.024,PPR_3|PF13812.2|0.0041,PPR_3|PF13812.2|0.0057,PPR_3|PF13812.2|0.00013,PPR_3|PF13812.2|0.14,PPR_3|PF13812.2|0.17 R_Transcript_156665:2-1444(+)
AAACGAAGAGAAGCAAAGCCAGCAGCAAGAATGATGAAACTCCATCGACCTCTTCTTCTTTCCCGGTACAATCTACTTCACATCACTCGCACTTCTTCTTACCTCCATATACTCACATTCCACTCTTCAATTCAATCACCATCACAAGGAACTGCAAAACCAGCAGAACCCCAGAAAGACTTGGACTTTATCTCAAAAACCCAAATAGCATCCCCATCTCGAATCCAAAAGCTAATATCTTCCCAATCTGACCCTCTCTTAGCTAAAGAGATCTTCGATTTGGCCTCACGTCAACCCAATTTCCATCACTCTTACCCCACTTTTCACACCCTCATTCTCAAACTAGCCCGTGCTCGTCAATTTTCTTTAATGGAAGACATTCTCTCTCAGCTCAAACGCCTTCGTTATCCCACCACTCCAGGCCTCTTTTCTCACTTAATTCGCATTTATGGCGATGCCCATTTGCCTGAAAAGGCCCTTAAGACCTTCTATCGTGTCATTGAGTTCAATTGTCAACCCACTTCAAAGCACCTCAACCTTGTCCTTGCCATCCTTTTGGCTCATAGGAACTTCCTTAGGCCCGCTTTTGACCTTTTTAGGATTGCCCATAAGTATGGAGTGGACCCCAATGTGGAAAGTTACAATCTTTTGATGAAGGCATTCTGTTTTAATGGTGAACTTAGTGTTGCCTATAAGCTGTTCAATGAAATGCTCAAGAGAGAAGTGTTGCCTAGTGTTGAGTCTTATAAGATTTTGATGCAAGCTTTGTGTAGGAAAAGTCAGGTTAATAAAGCTGCTGACTTGCTTGATGATATGCTTAATAAGGGTTTTGTGCCTGATACTTTGAGTTATACTACTTTATTAAATAGTTTGTGTAGAAAGAAGCAGCTTAAAGAGGCTTATAAGCTATTGTGTAGGATGAAAGTTAAGGGGTGTAATCCTAATATCACGCATTATAATACGGTTATATTGGGTTTGTGTCGACAGGGGCGTCCACTTGATGCTATCAAGATTCTGAGTGATATGTATTCCAATGGATGCTTGCCGAATCTGGTGTCTTATAGGACATTGGTTGGTGGGTTAGTTGATCAGGGAGTTTATGTTGAGGCGAGGAAGTATATGGAGGAAATGATGTCGAAAGGGCTTTCTCCGCACTTTTCGATAGCTCATGCTTTGATTAAAGGTTTGTGTAATGCAGGTGAAGTAGAGGATGCTTGTGTGGTGCTTCAAGAGCTGCTCAAACACGGAGAGTCGCCACATATTGAAACTTGGCAGGAAATCGTTCCTAGGATTTGTGAGGTGGAAGAAATAGATAGATTGAGTAGTTTATTGGATGAGGTAATGAAAGTTGAGATAAAACCTCATACAAGAATTGTTGAGGCAGGGGTAGCTTTGGAGGAATATTTGATTAAGAAGATACAGGCAAGGTCTAGAAAACCCTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_156665.p1 GENE.R_Transcript_156665~~R_Transcript_156665.p1 ORF type:5prime_partial len:481 (+),score=61.37,PPR_2|PF13041.2|2.5e+03,PPR_2|PF13041.2|6.9,PPR_2|PF13041.2|0.00023,PPR_2|PF13041.2|3.8e-15,PPR_2|PF13041.2|6.6e-13,PPR_2|PF13041.2|3.1e-10,PPR_2|PF13041.2|2.5e-12,PPR_2|PF13041.2|0.021,PPR_2|PF13041.2|0.0084,PPR_1|PF12854.3|2.7e-08,PPR_1|PF12854.3|2.1e-05,PPR_1|PF12854.3|8.9e-10,PPR_1|PF12854.3|9.7e-09,PPR_1|PF12854.3|0.0069,PPR_1|PF12854.3|0.00071,PPR|PF01535.16|73,PPR|PF01535.16|0.91,PPR|PF01535.16|3e-06,PPR|PF01535.16|0.00011,PPR|PF01535.16|2.1e-07,PPR|PF01535.16|2e-05,PPR|PF01535.16|0.011,PPR|PF01535.16|0.008,PPR_3|PF13812.2|1.6,PPR_3|PF13812.2|3.4,PPR_3|PF13812.2|8.2e+02,PPR_3|PF13812.2|0.024,PPR_3|PF13812.2|0.0041,PPR_3|PF13812.2|0.0057,PPR_3|PF13812.2|0.00013,PPR_3|PF13812.2|0.14,PPR_3|PF13812.2|0.17 R_Transcript_156665:2-1444(+)
KRREAKPAARMMKLHRPLLLSRYNLLHITRTSSYLHILTFHSSIQSPSQGTAKPAEPQKDLDFISKTQIASPSRIQKLISSQSDPLLAKEIFDLASRQPNFHHSYPTFHTLILKLARARQFSLMEDILSQLKRLRYPTTPGLFSHLIRIYGDAHLPEKALKTFYRVIEFNCQPTSKHLNLVLAILLAHRNFLRPAFDLFRIAHKYGVDPNVESYNLLMKAFCFNGELSVAYKLFNEMLKREVLPSVESYKILMQALCRKSQVNKAADLLDDMLNKGFVPDTLSYTTLLNSLCRKKQLKEAYKLLCRMKVKGCNPNITHYNTVILGLCRQGRPLDAIKILSDMYSNGCLPNLVSYRTLVGGLVDQGVYVEARKYMEEMMSKGLSPHFSIAHALIKGLCNAGEVEDACVVLQELLKHGESPHIETWQEIVPRICEVEEIDRLSSLLDEVMKVEIKPHTRIVEAGVALEEYLIKKIQARSRKP*

Click here to download the sequence:
Link to NCBI Protein BLAST