Transcript Information: R_Transcript_156671.p1


Annotated TAIR IDAT4G01400.1
Annotated Gene NameFUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: COG4 transport (InterPro:IPR013167), Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G46100.1); Has 26268 Blast hits to 8959 proteins in 289 species: Archae - 0; Bacteria - 3; Metazoa - 247; Fungi - 222; Plants - 25350; Viruses - 0; Other Eukaryotes - 446 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr4:573098-577243 | Reverse length=1110
E-Value1E-30
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.79360699803125
Replicate 20.30429420893186
Replicate 30.16599085214603
Condition 2: 8 Hour
Replicate 10
Replicate 20
Replicate 30.13153341029266
Condition 3: 24 Hour
Replicate 10
Replicate 20.47946214979516
Replicate 30.31721311140431


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_156671.p1 GENE.R_Transcript_156671~~R_Transcript_156671.p1 ORF type:internal len:138 (+),score=17.25,PPR_2|PF13041.2|0.002,PPR_2|PF13041.2|3.1e-13,PPR_2|PF13041.2|7.5e-05,PPR_2|PF13041.2|0.00013,PPR_1|PF12854.3|19,PPR_1|PF12854.3|1.5e-09,PPR_1|PF12854.3|0.0011,PPR_1|PF12854.3|1.8e-05,PPR|PF01535.16|0.18,PPR|PF01535.16|3.2e-06,PPR|PF01535.16|0.0018,PPR|PF01535.16|6.6e-05,PPR_3|PF13812.2|89,PPR_3|PF13812.2|2e-05,PPR_3|PF13812.2|0.021,PPR_3|PF13812.2|0.094 R_Transcript_156671:1-411(+)
AAGAAGCAGCTTAAAGAGGCTTATAAGCTATTGTGTAGGATGAAAGTTAAGGGGTGTAATCCTAATATCACGCATTATAATACGGTTATATTGGGTTTGTGTCGACAGGGGCGTCCACTTGATGCTATCAAGATTCTGAGTGATATGTATTCCAATGGATGCTTGCCGAATCTGGTGTCTTATAGGACATTGGTTGGTGGGTTAGTTGATCAGGGAGTTTATGTTGAGGCGAGGAAGTATATGGAGGAAATGATGTCGAAAGGGCTTTCTCCGCACTGTTCGATAGCTCATGCTTTGATCCAAGGTTTGTGTAATGCTGGTAAGCTAGAGGATGCTTGTGAGGTGCTTCAAGAGTTGCTCAAACATGGAGAGTCTCCACATAACAATACATGGCAGGAAATCGTTCCTAGG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_156671.p1 GENE.R_Transcript_156671~~R_Transcript_156671.p1 ORF type:internal len:138 (+),score=17.25,PPR_2|PF13041.2|0.002,PPR_2|PF13041.2|3.1e-13,PPR_2|PF13041.2|7.5e-05,PPR_2|PF13041.2|0.00013,PPR_1|PF12854.3|19,PPR_1|PF12854.3|1.5e-09,PPR_1|PF12854.3|0.0011,PPR_1|PF12854.3|1.8e-05,PPR|PF01535.16|0.18,PPR|PF01535.16|3.2e-06,PPR|PF01535.16|0.0018,PPR|PF01535.16|6.6e-05,PPR_3|PF13812.2|89,PPR_3|PF13812.2|2e-05,PPR_3|PF13812.2|0.021,PPR_3|PF13812.2|0.094 R_Transcript_156671:1-411(+)
KKQLKEAYKLLCRMKVKGCNPNITHYNTVILGLCRQGRPLDAIKILSDMYSNGCLPNLVSYRTLVGGLVDQGVYVEARKYMEEMMSKGLSPHCSIAHALIQGLCNAGKLEDACEVLQELLKHGESPHNNTWQEIVPR

Click here to download the sequence:
Link to NCBI Protein BLAST