Transcript Information: R_Transcript_157352.p2


Annotated TAIR IDAT3G15390.1
Annotated Gene Namesilencing defective 5
Annotated Gene Symbol(s)SDE5
Annotation TypeHomolog
Chromosome Positionchr3:5196689-5199531 | Reverse length=490
E-Value7E-10
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 14.9955472086599
Replicate 23.5362190174818
Replicate 33.1346061973682
Condition 2: 8 Hour
Replicate 12.8352054149442
Replicate 24.0014209610543
Replicate 33.4392525385996
Condition 3: 24 Hour
Replicate 14.1082391881155
Replicate 21.3929637194049
Replicate 32.9951595887333


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_157352.p2 GENE.R_Transcript_157352~~R_Transcript_157352.p2 ORF type:3prime_partial len:95 (-),score=30.81,DUF1771|PF08590.6|4.9e-14 R_Transcript_157352:3-284(-)
ATGACAAGCAAAAAAAGAGATGAAGAGGATGAATATGAGATCCTTCGCAAAGCTGTTAGGGAATATCGTGATGCAATGAAGGAATATTACAAAGCTGCTGCAGAAGCATTTGCGAGTGGTGATCGTGCTCGAGCAGGAATATTGCTGGAAAAGGGACAGTTTTTTCACAACAGAGCCTGTGAAACTGATGAAGAATCTGCCCGAAAGATTTTTGAGACCAGTGAAGACGGAGAGACGCAGGATGAAATGTGTCTTGATCTGCAACATCACGATGCCAAAGAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_157352.p2 GENE.R_Transcript_157352~~R_Transcript_157352.p2 ORF type:3prime_partial len:95 (-),score=30.81,DUF1771|PF08590.6|4.9e-14 R_Transcript_157352:3-284(-)
MTSKKRDEEDEYEILRKAVREYRDAMKEYYKAAAEAFASGDRARAGILLEKGQFFHNRACETDEESARKIFETSEDGETQDEMCLDLQHHDAKE

Click here to download the sequence:
Link to NCBI Protein BLAST