Transcript Information: R_Transcript_157393.p1


Annotated TAIR IDAT3G01680.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Mediator complex subunit Med28 (InterPro:IPR021640); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01670.1); Has 122 Blast hits to 112 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 122; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr3:252033-255246 | Forward length=740
E-Value3E-17
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.89153279727418
Replicate 20.053975065337527
Replicate 30.11777242980027
Condition 2: 8 Hour
Replicate 10.12589133648969
Replicate 20.40238090716786
Replicate 30.51328461908549
Condition 3: 24 Hour
Replicate 10.47213999440008
Replicate 20.17009197087849
Replicate 30.45013274420354


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_157393.p1 GENE.R_Transcript_157393~~R_Transcript_157393.p1 ORF type:3prime_partial len:389 (+),score=50.02,SEO_N|PF14576.2|2.9e-16 R_Transcript_157393:41-1165(+)
ATGGCCAACAGCAGCGTTCCACTCGATGACGTCGACTTGCTTTTTGACTACGCCAAGAGTGTGTTTCATAAAGCTCCTCATTGGGGATTTGAAAACATAGACTACTTCAAGGATGGGCACCATGAAGCTTCACACAAGGAAATTATAATCCCCCAAAAATTTGTACGTATCGTACATGACGTTTCCAATAAGCTACCAACTACAACTTCACCTAGCATATGGCGCCGGTCATCTGCTCCGAGTGTCGCAGAGACGTATCAAGATATGTTGTGGGGCTACACATGGGCCGAAAAGCCGGTGATTGCGGTGGCGGCTTTGGCACTAATCTTTGCAAAATATGGAGTTATGTTTGAGCTCTATAAAAAACATCCTTCTGCTACCTCATTGGCCGCCCTTAAGCCACTAATATTTTCTATACTAGACTTGCCCGAGTTCCACCGGGTTGACTCAACCCTCCGAAAGCTTACTATCAAATTCCTAGACCGTTACATCTCCAGAATGTTGGAAACAACTGAGTTGATCCTCCAAATAAAAAAGTTGTATGAGAAGAACATCAATTACTTCACCCCTAATCAAGATCCACCTTTTCTCTCTGATTCTAATGATATTCCAGAAGCTACAGCTAATGTTATATCTGCAGCCTGTGGTTGTGCCCTGTTCCTCAATATGCCTGTTGCCACCCAAGAGAAATTTGATGTAGAAGCTGTGTTGAGTGCCACCATGAAGTGGACAGATCTTAAGCCAGTACTTTGTAATTGCAATGAGCATATAGAAAAAATGAAGTACGAAGAGAATTATCGCAATCTCATTGCTCTCTTTGAAAATCCTCAACCTGACAACATTAGTGTTCTCAGGCATTTGATACATCTGGAGGAGGATGAGGACACACGTCCTCTTATCCGAGGCACCACCCAAACAAAGATTGAAGTGCTTAAGGAAAAACAAGTGTTGTTACTCATATCAGAACTGGATATCTCCCATAAAGAGTTGATGATCCTAGGCAACGTGTACCAAGAATCAAAGGGCCAATATGAAATTGTTTGGCTCCCAAAAGTGGGCAAGTACTATTTGTCGAATGAAGAAGAAAAACAAAGATATAAGAAGCTCCAATCAAAGATGCCTTGG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_157393.p1 GENE.R_Transcript_157393~~R_Transcript_157393.p1 ORF type:3prime_partial len:389 (+),score=50.02,SEO_N|PF14576.2|2.9e-16 R_Transcript_157393:41-1165(+)
MANSSVPLDDVDLLFDYAKSVFHKAPHWGFENIDYFKDGHHEASHKEIIIPQKFVRIVHDVSNKLPTTTSPSIWRRSSAPSVAETYQDMLWGYTWAEKPVIAVAALALIFAKYGVMFELYKKHPSATSLAALKPLIFSILDLPEFHRVDSTLRKLTIKFLDRYISRMLETTELILQIKKLYEKNINYFTPNQDPPFLSDSNDIPEATANVISAACGCALFLNMPVATQEKFDVEAVLSATMKWTDLKPVLCNCNEHIEKMKYEENYRNLIALFENPQPDNISVLRHLIHLEEDEDTRPLIRGTTQTKIEVLKEKQVLLLISELDISHKELMILGNVYQESKGQYEIVWLPKVGKYYLSNEEEKQRYKKLQSKMPW

Click here to download the sequence:
Link to NCBI Protein BLAST