Transcript Information: R_Transcript_157396.p1


Annotated TAIR IDAT3G01680.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Mediator complex subunit Med28 (InterPro:IPR021640); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01670.1); Has 122 Blast hits to 112 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 122; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr3:252033-255246 | Forward length=740
E-Value0.0002
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.58461440780238
Replicate 20.44831958184266
Replicate 30.24455591739665
Condition 2: 8 Hour
Replicate 10.52282985652481
Replicate 20.23872827588454
Replicate 30.58136831168499
Condition 3: 24 Hour
Replicate 10.89870419752578
Replicate 20.078488465802766
Replicate 30.62313749998284


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_157396.p1 GENE.R_Transcript_157396~~R_Transcript_157396.p1 ORF type:complete len:281 (+),score=26.89,SEO_N|PF14576.2|2.4e-13 R_Transcript_157396:41-844(+)
ATGGCCAACAGCAGCGTTCCACTCGATGACGTCGACTTGCTTTTTGACTACGCCAAGAGTGTGTTTCATAAAGCTCCTCATTGGGGATTTGAAAACATAGACTACTTCAAGGATGGGCACCATGAAGCTTCACACAAGGAAATTATAATCCCCCAAAAATTTGTACGTATCGTACATGACGTTTCCAATAAGCTACCAACTACAACTTCACCTAGAATTTGGCGCCGCTCAAGTTCATCAAGTGACGCGGAACCGTACGAAGACATGTTGCGGGTGTACACATGGGACCAAAAGCCGGTGATTGTGGCGGCGGCTTTGTCACTAATCTTTGCAAAATATGGAGTTATGTTTGAGCTCTATAAAAAACATCCTTCTGCTACCTCATTGGCCGCCCTTAAGCCACTAATATTTTCTATACTAGACTTGCCCGAGTTCCACCGGGTTGACTCAACCCTCCGAAAGCTTACTATCAAATTCCTAGACCGTTACATCTCCAGAATGTTGGAAACAACTGAGTTGATCCTCCAAATAAAAAAGTTGTATGAGAAGAACATCAATTACTTCACCCCTAATCAAGATCCACCTTTTCTCTCTGATTCTAATGATATTCCAGAAGCTACAGCTAATGTTATATCTGCAGCCTGTGGTTGTGCCCTGTTCCTCAATATGCCTGTTGCCACCCAAGAGAAATTTGATGTAGAAGCTGTGTTGAGTGCCACCATGAAGTGGACAGATCTTAAGCCAGTACTTTGTAATTGCAATGAGCATATAGGTAAACCTAGGGTTTCAATAATTGGCACATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_157396.p1 GENE.R_Transcript_157396~~R_Transcript_157396.p1 ORF type:complete len:281 (+),score=26.89,SEO_N|PF14576.2|2.4e-13 R_Transcript_157396:41-844(+)
MANSSVPLDDVDLLFDYAKSVFHKAPHWGFENIDYFKDGHHEASHKEIIIPQKFVRIVHDVSNKLPTTTSPRIWRRSSSSSDAEPYEDMLRVYTWDQKPVIVAAALSLIFAKYGVMFELYKKHPSATSLAALKPLIFSILDLPEFHRVDSTLRKLTIKFLDRYISRMLETTELILQIKKLYEKNINYFTPNQDPPFLSDSNDIPEATANVISAACGCALFLNMPVATQEKFDVEAVLSATMKWTDLKPVLCNCNEHIGKPRVSIIGT*

Click here to download the sequence:
Link to NCBI Protein BLAST