Transcript Information: R_Transcript_15818.p1


Annotated TAIR IDAT1G04020.1
Annotated Gene Namebreast cancer associated RING 1
Annotated Gene Symbol(s)ATBARD1, BARD1, ROW1
Annotation TypeOrtholog
Chromosome Positionchr1:1036610-1040045 | Forward length=714
E-Value6.7E-158
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 110.848213673797
Replicate 27.8326624248034
Replicate 39.2601705175935
Condition 2: 8 Hour
Replicate 15.9043929660024
Replicate 24.9479398116666
Replicate 39.3204014816739
Condition 3: 24 Hour
Replicate 112.960577697342
Replicate 211.856656907133
Replicate 314.591803124598


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_15818.p1 GENE.R_Transcript_15818~~R_Transcript_15818.p1 ORF type:complete len:705 (+),score=134.10,BRCT|PF00533.22|9.7e+03,BRCT|PF00533.22|5e-10,BRCT|PF00533.22|0.13,zf-HC5HC2H|PF13771.2|1.6e+04,zf-HC5HC2H|PF13771.2|1.5e+04,zf-HC5HC2H|PF13771.2|1.4e-10,zf-HC5HC2H_2|PF13832.2|9.5e+03,zf-HC5HC2H_2|PF13832.2|1.3e-07,BRCT_2|PF16589.1|14,BRCT_2|PF16589.1|0.00048 R_Transcript_15818:94-2208(+)
ATGGCGGATACTCATACCCGTTTCCTTAATCCTTGGGTTCTTCATCTTCAAAAACTCGGCCTTGAACTCAAATGCCCCTTTTGCTTGAAGTTTTACAACAAACCAATGTTACTACCCTGCAACCACATTCTCTGTTGTTCTTGTGTGCCCAAATCTAATTCATTTGGATCAGAATGTCCTCTCTGCAAGCTTCGGTACTTTGAACAAGAAGTGAGGCCAGCTCCTTATATTGAAAATGTTGTCAACATCTATCGAAGTTTGGATGCTTCGTTTGCTCGACACATGTTTGAATCAGATATCGGAGGAGTTTCAGAAGGAGTGCTTAATTCCTCTTCACCTGGGAACTTGAGTAGTGGGCCATTGGGTACTAAGCGAGTTCAGGGGTCGAAAAATTCTTCTGTAGTGACCAGGATGGTGGAGAAAGGCACAGCTAACTCTGGCTTCAGGAATGGGGGTGTGGTGCAGGATTATCAGACATTTGAAAGCAATATGAGTTCTATGGAACATCATCAAGCAAGAGCTGCACAACAAGAACATGGAGCTTTGGTAGACGTGGACATGAAGCAGATTGAATTGTCCCCAGATAGCCCTCCTTCCTCTGGTGTCAGCAAGGGTGTTGAAACTGATAGTCGTGATCCAGCTTGCAGCGATGATACTACTCAGACCTGCTCATCAAAGAAATCTGCCAAGAGGAATGTCGATGATTTCGGAGCACATAGGGTTGTTGAATGCCGTGATTCTTCTATCAAGAGGCAAAAGCTGCTAAATCATGGTCTGCCCTCAACACATGAGGGTCATTCACCCCTGTCGACACCTATGAATTTGCAGAACTCTGCATCTACTAGCTCAGACTTAAACGGAAAATGTGTGAGTTACTCTGGTGACCCAGTTGCAGTCGAAGCAGATTCTACAAGTTTAGTCAACTTCCTTTGTGCATTCTGCCAGACTTGGAAAATAACGGAGGGTAGTGGACCAATGCAACATTTTGCTGACGGGAAACAAGTTTTTGGAAGTGAAGCTGGTCGTTCTGATGTCATACATGTCCACAAAAGCTGCATTGAATGGGCTCCCCAAATCTTCTATGAGAGCGACACGGTTATAAAGAATTTGGATAAAGAGTTGGCCAGGGCTGGAAAGCTCAAGTGCACAAGTTGTGGGCTTAAGGGAGCTGCACTTGGCTGTTTTGCAAAATCCTGCCGCAGAAGTTACCATGTTCCTTGTGCTTTTGGAATTGAAGACTGCAGATGGGATTCAGATGAATTCCTGATGCTCTGCCCTTTTCATACTTCACATAAGTTTCCAAGTGAGAAGTTCCGAAAGAAGCTTGCTCCAAAGAAATGTACAACTACAATATCAGCTCAAACGACAACGTCAGCTCCAATCTATGATGATCAGAAAAGTGCACAGCAGTCGGATTTTTGGGCATCATCACCTACTGGAGCTAAAAATTGGGTTCTATGTGGATCTGCTCTGTCTGCTGAGGAAAAGTTTTTGTTGGTCAAATTTGCAAACTTGTGCGGTGCAACTGTGACCAAATCTTGGAATCCAAATGTCACTCATGTAATTGCAGCAACAGATGCAAATGGTGCATGCAGTAGGACCTTGAAAGTTCTCATGGCAATTCTTAAGGGACGATGGATACTTAGAACTGACTGGATCAGCGCATGCATGCGATCCAAATCTCCTGTGCATGAAGAGCTTTATGAAATCAGCCTTGATAATCATGGCTGTACTGATGGCCCCAAAACTGGCAGACTAAGGGCTCTGAATAATGCACCACAGCTATTTAGCAGCTTGAAATTCTATTTCACTGGTGACTTTGTGCCCACATACAAAAAGGACATCCAAGGTTTAATTATAGCTGCTGGAGGCACCATCCTTGAGAACAAAGAACAGCTACAATCATCTTGCGGTGCCCAATCTAATCTATCAACAACCTTAGTTATTTACAATAATGATGTCCTGATGGGTACAGAAGATGCTTGTGAGATGTCGAGACGACAAGCAGAAGCAGAAAGGGTGGCAATTGAAAGTGGGTCTCAAGTGATTGCTCACACTTGGATTTTGGATTCAATCGCTTCAGGCTCATTGCAGTCCTTCGCTCCTCCAAGATAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_15818.p1 GENE.R_Transcript_15818~~R_Transcript_15818.p1 ORF type:complete len:705 (+),score=134.10,BRCT|PF00533.22|9.7e+03,BRCT|PF00533.22|5e-10,BRCT|PF00533.22|0.13,zf-HC5HC2H|PF13771.2|1.6e+04,zf-HC5HC2H|PF13771.2|1.5e+04,zf-HC5HC2H|PF13771.2|1.4e-10,zf-HC5HC2H_2|PF13832.2|9.5e+03,zf-HC5HC2H_2|PF13832.2|1.3e-07,BRCT_2|PF16589.1|14,BRCT_2|PF16589.1|0.00048 R_Transcript_15818:94-2208(+)
MADTHTRFLNPWVLHLQKLGLELKCPFCLKFYNKPMLLPCNHILCCSCVPKSNSFGSECPLCKLRYFEQEVRPAPYIENVVNIYRSLDASFARHMFESDIGGVSEGVLNSSSPGNLSSGPLGTKRVQGSKNSSVVTRMVEKGTANSGFRNGGVVQDYQTFESNMSSMEHHQARAAQQEHGALVDVDMKQIELSPDSPPSSGVSKGVETDSRDPACSDDTTQTCSSKKSAKRNVDDFGAHRVVECRDSSIKRQKLLNHGLPSTHEGHSPLSTPMNLQNSASTSSDLNGKCVSYSGDPVAVEADSTSLVNFLCAFCQTWKITEGSGPMQHFADGKQVFGSEAGRSDVIHVHKSCIEWAPQIFYESDTVIKNLDKELARAGKLKCTSCGLKGAALGCFAKSCRRSYHVPCAFGIEDCRWDSDEFLMLCPFHTSHKFPSEKFRKKLAPKKCTTTISAQTTTSAPIYDDQKSAQQSDFWASSPTGAKNWVLCGSALSAEEKFLLVKFANLCGATVTKSWNPNVTHVIAATDANGACSRTLKVLMAILKGRWILRTDWISACMRSKSPVHEELYEISLDNHGCTDGPKTGRLRALNNAPQLFSSLKFYFTGDFVPTYKKDIQGLIIAAGGTILENKEQLQSSCGAQSNLSTTLVIYNNDVLMGTEDACEMSRRQAEAERVAIESGSQVIAHTWILDSIASGSLQSFAPPR*

Click here to download the sequence:
Link to NCBI Protein BLAST