Transcript Information: R_Transcript_158482.p1


Annotated TAIR IDAT1G03790.1
Annotated Gene NameZinc finger C-x8-C-x5-C-x3-H type family protein
Annotated Gene Symbol(s)SOM
Annotation TypeOrtholog
Chromosome Positionchr1:954589-955770 | Forward length=393
E-Value7.5E-59
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 112.815908755441
Replicate 26.2542171452803
Replicate 37.7284129883675
Condition 2: 8 Hour
Replicate 15.5074589850947
Replicate 23.4662765164148
Replicate 34.3585934316431
Condition 3: 24 Hour
Replicate 112.909405280016
Replicate 26.3685398012305
Replicate 313.172539598801


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_158482.p1 GENE.R_Transcript_158482~~R_Transcript_158482.p1 ORF type:5prime_partial len:329 (+),score=-7.43,zf-CCCH|PF00642.20|55,zf-CCCH|PF00642.20|9.5e-06,zf-CCCH|PF00642.20|2.3e+02,zf-CCCH|PF00642.20|4.5e+03 R_Transcript_158482:1-987(+)
CTCGGACACCACTACACTCCAATTCCAAAACAAATTTCCCAAACAAAAATGATGATCGGAGAGACACACCGTCACCACCAAAGCCACGTGCCACCCTGGCAGTTACCAGACCCAATTCCAACACCACCGAACGACGAAGTACTGGCTTCATTAAGACGATACCTCCTTTCCACCTCCTCCGAAGACGCCGACTTCTCTGGCGACTTCGACTTCCCGGCGGAAGACGATGACGAGTTCTTCATGTACGAGTTCAAGGTCAGGAAGTGCACCCGGGCCCGGGCCCACGACTGGACCGAGTGCCCGTTTGCTCATCCGGGCGAGAAGGCCCGAAGGCGCGACCCGAGGAAGTACAGTTATTCGGGTACTGCGTGCTCCGATTTCCGTAAGGGCGGGTGTAAGAAGGGCGACGCCTGTGAGTTCGCTCATGGTGTTTTTGAGTGTTGGCTTCACCCCTCTCGGTACCGGACCCAGGCTTGTAAGGACGGGCCCGGGTGCAAGCGCCGGGTTTGTTTCTTCGCCCACTCCCCTGACCAGATTCGGGCCGGGTCGGGCCTCGTCGGGAGCCCGAGGAGCGACAGCTCCGACGGGGTCGGGTCCGTGGGGGAGCTCGTGGCCTCGCTGAGGAACCTGCAGCTAAATAAGGTCAAGTCCATGCCGACGAGCTCCGTGTGGGGCGTTGGTTCACCGGTCTTCGGGTCTCCGAGAGGCGGGTCCGTCAGTCGGGCCGGGTTCCTCAGCCTGCCCACGACCCCGACCCGTCCCGGTATCGGGTTATTGGACTGGGGGGATAATAATAATAACAATAAGAAGGGTGAGGAGGAGGAGGGGGGTGTGGTTATGGAGAGGGTGGAATCGGGCCGGGAGCTCCGGGCCAAGATGTTCGAGAAGCTGAGCAAGGAGAACCCGCTGAATGGGCCCAGCCGGGTTGCGGGGTTAGGCCCGGCGCAGGGGCCTGATCTTGGGTGGGTGTCTGATCTCATAACTTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_158482.p1 GENE.R_Transcript_158482~~R_Transcript_158482.p1 ORF type:5prime_partial len:329 (+),score=-7.43,zf-CCCH|PF00642.20|55,zf-CCCH|PF00642.20|9.5e-06,zf-CCCH|PF00642.20|2.3e+02,zf-CCCH|PF00642.20|4.5e+03 R_Transcript_158482:1-987(+)
LGHHYTPIPKQISQTKMMIGETHRHHQSHVPPWQLPDPIPTPPNDEVLASLRRYLLSTSSEDADFSGDFDFPAEDDDEFFMYEFKVRKCTRARAHDWTECPFAHPGEKARRRDPRKYSYSGTACSDFRKGGCKKGDACEFAHGVFECWLHPSRYRTQACKDGPGCKRRVCFFAHSPDQIRAGSGLVGSPRSDSSDGVGSVGELVASLRNLQLNKVKSMPTSSVWGVGSPVFGSPRGGSVSRAGFLSLPTTPTRPGIGLLDWGDNNNNNKKGEEEEGGVVMERVESGRELRAKMFEKLSKENPLNGPSRVAGLGPAQGPDLGWVSDLIT*

Click here to download the sequence:
Link to NCBI Protein BLAST