Transcript Information: R_Transcript_158616.p1


Annotated TAIR IDAT1G34070.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G48050.1); Has 648 Blast hits to 647 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 16; Fungi - 25; Plants - 607; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:12402283-12403209 | Forward length=308
E-Value8E-16
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.35860434095715
Replicate 20.12375029714911
Replicate 30.13501024123469
Condition 2: 8 Hour
Replicate 10.52916407548074
Replicate 20.87862011163794
Replicate 30.82021030308232
Condition 3: 24 Hour
Replicate 10.18041498803697
Replicate 20.21665283782492
Replicate 31.2040387647016


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_158616.p1 GENE.R_Transcript_158616~~R_Transcript_158616.p1 ORF type:complete len:509 (+),score=49.97,UBN2|PF14223.2|5.4e-18,UBN2_2|PF14227.2|1.2e-14,UBN2_3|PF14244.2|8.4e-14 R_Transcript_158616:406-1932(+)
ATGGCTGCTTCTTCTTCCCCACCCTCAACCTCTGTTCTTTCTCCTGTTTCTTCATCTTCACAGCCACTCTCTACTGCCGCTGTCCCATTGTCTTCTGCCCAGTCCACGATTCTGGAACAGCACGGCACCTCGACGCCGGCACGAACTTCGTCTGGGCCACCACGCGGCTCTGCTTTTCCTTACTTCGCGTGGTCCTCTGCACTCCCATCGCCTTCCCTTCCGCACTCGACTGTTCTTCATAGCACCTATGAGATTGGGGAATCCAGTGCTCCAAGACCCTCCATGGCGTCCTTTGGCTTCGCCCCTCATGTCTCAACCGGCCCCTCCTCGTCGCTGTTTGGCTCGGTTTTTCCAGCGGGTGCCTCTCACTTTGGTCATCAATTTCCTCCTGTGGCAGCCCCAAACGTTACTAATTTGGTCACCACTACTCTTACTACTGTTGAGGATTTTCTTTCCTGGCGAACGCAATTCACGGCGTTCCTTGTCTCCCATGGTCTCTTAGGCTATGTTGATGGTTCCATCCCTCGTCCGGCTGAGTCATTTGTTGACTCTCAAGGTATTCCTCGCTACAACTCTGAATATCAATCTTGGTTACGCATTGATCAAAGCATTCGGTGTTGGTTGTATGCCACCTTGTCCAAGGAGATGTTAGTTGAATTTCATGATATTTCTCATTCTTATGAAATTTGGGACCGTTTGCATACTCGCTTTAACACTGATAGTCTTGCTCGGTCTATTGAACTAAAGCGCTCCTTAACTATGATTAAAAAAAGTGATCAACAGTCCATCGAATCCTACTTGCGTGACGTTAAGCGCATTGCCGATGCTCTTGCGTCTATTCGTTGTCCTGTGTCTAATCAAGATTTGGTACAATATACTTTGATGGGGTTACCTGCTGAATATGAGACTATGATTACTATCTTATTACATCAATCTGGTACTTTACGTTTTGATGACCTGCGTGCTACTTTGATCCTCCATGAGCAACGCTTGAAAATGTTTCGTGGGCAAGATCATCCTGTCCCGCATCAGGCCTTTGCTGCTCAGTCCAGTGCGTTGAGTAGGTCCGCTGCAGCCTCGGAAAATGGGTCTACCTCGCGGCAAAGCACTGGTCGCAACAGCAACAATTGGCGTAACCGCGGAAATTCACGCAACAACAACAACAACCGCAATAATAATACCATTAGCAGAGGTCGTGGGGGTCGTGGTCAGCAACAGAGACGCAATGATTCTGTTTCGTCTTCTGGAACTTCCCAAACTGGTTTGCAATCATTTTATGCTGAGCTTGTTAAATCTTTGTCTTATGATAATATTGGTACCTCGAAACTGTGTGCTAACGGTTTCTTGAATGCAGGCACTACTGTCAGTGATGGGATTTTAGGTGCTCCCCCCACTCCCCTTGTATGTCGTATTTGTTATTACCTTGGCCATCCTGCGTCTCAATGTCCTTTCAGGGTCTCCAATGGGTCAGCCACTAATTCGAGTCTAAGTGTCCGCTCAATCCTTTGCTTCTATGACTGCCGGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_158616.p1 GENE.R_Transcript_158616~~R_Transcript_158616.p1 ORF type:complete len:509 (+),score=49.97,UBN2|PF14223.2|5.4e-18,UBN2_2|PF14227.2|1.2e-14,UBN2_3|PF14244.2|8.4e-14 R_Transcript_158616:406-1932(+)
MAASSSPPSTSVLSPVSSSSQPLSTAAVPLSSAQSTILEQHGTSTPARTSSGPPRGSAFPYFAWSSALPSPSLPHSTVLHSTYEIGESSAPRPSMASFGFAPHVSTGPSSSLFGSVFPAGASHFGHQFPPVAAPNVTNLVTTTLTTVEDFLSWRTQFTAFLVSHGLLGYVDGSIPRPAESFVDSQGIPRYNSEYQSWLRIDQSIRCWLYATLSKEMLVEFHDISHSYEIWDRLHTRFNTDSLARSIELKRSLTMIKKSDQQSIESYLRDVKRIADALASIRCPVSNQDLVQYTLMGLPAEYETMITILLHQSGTLRFDDLRATLILHEQRLKMFRGQDHPVPHQAFAAQSSALSRSAAASENGSTSRQSTGRNSNNWRNRGNSRNNNNNRNNNTISRGRGGRGQQQRRNDSVSSSGTSQTGLQSFYAELVKSLSYDNIGTSKLCANGFLNAGTTVSDGILGAPPTPLVCRICYYLGHPASQCPFRVSNGSATNSSLSVRSILCFYDCR*

Click here to download the sequence:
Link to NCBI Protein BLAST