Transcript Information: R_Transcript_158619.p1


Annotated TAIR IDATMG00820.1
Annotated Gene NameReverse transcriptase (RNA-dependent DNA polymerase)
Annotated Gene Symbol(s)ORF170
Annotation TypeHomolog
Chromosome PositionchrM:228573-229085 | Reverse length=170
E-Value4E-12
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.89768660433043
Replicate 20.71969435108026
Replicate 30.61448774475521
Condition 2: 8 Hour
Replicate 10.80281524417197
Replicate 21.0997155003862
Replicate 31.379630613472
Condition 3: 24 Hour
Replicate 11.2659297577124
Replicate 20.95320791032301
Replicate 31.4678788538158


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_158619.p1 GENE.R_Transcript_158619~~R_Transcript_158619.p1 ORF type:complete len:671 (+),score=57.79,rve|PF00665.22|1.1e-18,RVT_2|PF07727.10|2.3e-09,gag_pre-integrs|PF13976.2|8.1e-08 R_Transcript_158619:1029-3041(+)
ATGACTGCCGGTGAAGCTAATGATGCTCCGTGGTACCCTGACTCAGCCGTGGCAGCCCATATGACACCATCCGAAGGTATGCTTCGTTCTTTAACTCCATATACTGGTTCTAATTTTATTGAGGTTGCAAACGGTACTCGTGTCCCTATTCTCCAAACTGGCAATGCTATGCTTCCCACCTCCTCTAAGCCTTTAGTCCTCAAGGATGTTTATCATGCTCCTAACCTGAAGCACAATCTCTTGTCTATACAGCGTCTTTGTCATGATAATAACTGTGTGGTTAATTTTGATTCTTCTTCTGTTAAAATCAAGGACAAGAACACGGGGGCGGTTCTTCTTGAAGCTTCCAATCACGGCAGTGTCTACCCTATCTACCCGTCTAGTCAGTCTGTTCCTGCTTTGATCGATGCATCTCAACCTAGCAGCATTTGGCATCAGCGTCTTGGACACACTAGTTCTGCTACTTTAGATACTCTTAGGAAAAACAATGCTATTTCTGCTCGTCGTTTTCTCAATGACTGTGTTTCTTGCAAACTTGGAAAGTCACATAAACTTCCTTTTTCTCTTGCAACTCATACCTGTGATAAACCTTTACAATTAATTCATTCAGATGTTTGGCAGTCTCCTATTGTGTCTAATCTGGGTTACAGATATTATGTTGTGTTTGTGGATGATTTTTCGCGTTTCACATGGCTTTATCCAATGAAATACAAATCTGAGGTGTGTGATATTTTTCGACGTTTTAAATATTTAGTGGAAAATCTGTTTGACTGCAAAATAAAGGTTTACCAAAGTGATGGTGGTCAGGAATTTGATAATACCGATTTACAAAATTTCTGTTTGGATTCTGGTATTTTGTATCGTAAGTCTTGTCCCGGCACTCCGGAACAAAACGGTGTTGCGGAACGCAAGCACAGACACATCATTGAATCTGCGCGCACCATGCTCATTCATGCCGGCATGCCTAGTCATTTTTGGGTCGATGCCGCATATACTGTAGTGTTTGTGATTAATCGTCTTCCCACACCAGTTTTAAAAGGGAAAACCCCCTTTGAAATATTGTTTGGTAAAAAGCCTGATTATAATGCTCTTCGAAGTTTTGGCAGTGAATGTTTTCCTCATTTAATTATACAACAACCTCACAAATTGCTTCCTCGATCTGTACGTTGTATTTTCATTGGATATGCCTCACAGTATAAAGGCTATCATTGCCTCGATCTAGTTACGGGTCGGGTTTACACAAGCCGACATGTCATGTTTCATGAGTCCAGTTTTCCTTACACTCAACTCACTAGTGTGTCTACACCTATGGCCTCCCACAGTGCCCCTACTCTTTTAAGTTCGTGGTCTCCTACTTTAACTCGTGATGGATCTTCTCATGTCCCCGCTCCTTCATCTACACCCAGTGTCACTCGCCCGCTAGTCTGCACGTCTGCAGACACCACTAGCCCCTCTTCGTCCGTGTCTTGTGTGTCTGGTTCTCTCCCCGTATCGGCACACTCTCTCCGCCCTGAGTCTCCCTCCATTGGTGCTATAGGATTCTCTGGGACGCGCTCAGCGCCCAACCAGTCACGTAGTCCCGTGCTCAGCAGTCCTTCATCTCCTCCTATTGAGTCTTCGGTGTCTTCTCCCTGCACAGCTCCTCCTGTTCTCAACCCGGTGTCCAACCCCGAAGGGCCCTCAGCCTCAGGGGGTGCTACTACCACCAACATCCACCCCATGCGCACTCGGCTCAAAGATGGTATTGTCAAGCCCCGCAATATTCTCTCTCTTTCTGCCCACCAACATAGCCCTGACCCCAAGCATCATACTCAAGCCCTCAAACGCTCTATATGGCGCAATGCCATGGATGAGGAGTTCAATTCTCTCATCACCACGAGAACCTGGGATCTTGTACCGTTTGATAACAGCAAAAATTTAGTTCAAAGTATGTGGATTTTTAAAACTAAGTATAACTCTGATGGTTCTGTGGAGCGACCCAAGGCTCGACTGGTGGCCCAAGGCAACAGATAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_158619.p1 GENE.R_Transcript_158619~~R_Transcript_158619.p1 ORF type:complete len:671 (+),score=57.79,rve|PF00665.22|1.1e-18,RVT_2|PF07727.10|2.3e-09,gag_pre-integrs|PF13976.2|8.1e-08 R_Transcript_158619:1029-3041(+)
MTAGEANDAPWYPDSAVAAHMTPSEGMLRSLTPYTGSNFIEVANGTRVPILQTGNAMLPTSSKPLVLKDVYHAPNLKHNLLSIQRLCHDNNCVVNFDSSSVKIKDKNTGAVLLEASNHGSVYPIYPSSQSVPALIDASQPSSIWHQRLGHTSSATLDTLRKNNAISARRFLNDCVSCKLGKSHKLPFSLATHTCDKPLQLIHSDVWQSPIVSNLGYRYYVVFVDDFSRFTWLYPMKYKSEVCDIFRRFKYLVENLFDCKIKVYQSDGGQEFDNTDLQNFCLDSGILYRKSCPGTPEQNGVAERKHRHIIESARTMLIHAGMPSHFWVDAAYTVVFVINRLPTPVLKGKTPFEILFGKKPDYNALRSFGSECFPHLIIQQPHKLLPRSVRCIFIGYASQYKGYHCLDLVTGRVYTSRHVMFHESSFPYTQLTSVSTPMASHSAPTLLSSWSPTLTRDGSSHVPAPSSTPSVTRPLVCTSADTTSPSSSVSCVSGSLPVSAHSLRPESPSIGAIGFSGTRSAPNQSRSPVLSSPSSPPIESSVSSPCTAPPVLNPVSNPEGPSASGGATTTNIHPMRTRLKDGIVKPRNILSLSAHQHSPDPKHHTQALKRSIWRNAMDEEFNSLITTRTWDLVPFDNSKNLVQSMWIFKTKYNSDGSVERPKARLVAQGNR*

Click here to download the sequence:
Link to NCBI Protein BLAST